Gene detail

Gene detail information of Glyur000561s00023443.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32440.2	2.00E-67	ent-kaurenoic acid hydroxylase 2
NR	B5BSX1.1	1.14E-178	RecName: Full=Beta-amyrin 11-oxidase; AltName: Full=Cytochrome P450 88D6 [Glycyrrhiza uralensis]
COG	NP_485493.1	2.00E-25	cytochrome P450 [Nostoc sp. PCC 7120]
Swissprot	tr\|B5BSX1\|BAMO_GLYUR	0	Beta-amyrin 11-oxidase
trEMBL	tr\|A0A072TTK5\|A0A072TTK5_MEDTR	3.00E-147	Cytochrome P450 family 88 protein {ECO:0000313\|EMBL:KEH20767.1}

Sequence

Transcript Sequence

>Glyur000561s00023443.1
AAACAGATTCAGAAAAATGGAAGTACATTGGGTTNGCATGTNCGCTGCCACTTTGTTGGTATGCTACATTTTTGGAAGCAAGTTTGTGAGGAATTTGAATGGGTGGTATTATGATGTAAAACTAAGNAGGAAAGAACACCCACTACCCCCAGGTGACATGGGATGGCCTCTTATCGGNNATCTATTGTCCTTCATCAAAGATTTCTCATCGGNTCACCCTGATTCATTCATCAACAACCTTGTTCTCAAATATGGACGAAGTGGTATCTACAAGACTCACTTGTTTGGGAATCCAAGCATCATTGTTTGNGAGCCTCAGATGTGTAGGCGAGTTCTCACTGATGATGTGAACTTTAAGCTTGGTTATCCAAAATCTATCAAAGAGTTGGCACGATGTAGACCCATGATTGATGTCTCTAATGCGGAACATAGGCTTTTTCGACGCCTCATTACTTCCCCAATCGTGGGTCACAAGGCGCTAGCAATGTACCTAGAGCGTCTTGAGGAAATTGTGATCAATTCGTTGGAAGATTGTCCAGCATGAAGCACCCCGTTGAGCTCTTGAAAGAGATGAAGAAGGTTTCCTTTAAAGCCATTGTCCACGTCTTCATGGGCTCTTCCAATCAGGACATCATTAAAAAAATTGGAAGTTCGTTTACTGATTTGTACAATGCATGTTCTCTATCCCCATTAACGTACCTGGCACGTAAGAAGCTAGCCAAAATAGTTCAACCCGTTGTGGATGAAAGGCGGTTGATGATAGAAAATGGTCCACAAGAAGGGAGCCAAAGAAAAGATCTTATTGATATTCTTTTGGAAGTCAAAGATGAGAATGGACGAAAATTGGAGGACGAGGATATTAGCGATTTATTAATAGGGCTTTTGTTTGCTGGCCATGAAAGTACAGCAACCAGTTTAATGTGGTCAATTACATATCTTACACAGCATCCCCATATCTTGAAAAAGGCTAAGGAAGAAATAACGAGGACAAGATTTTCCTCGCAGAAACAATTAAGTCTTAAGGAAATTAAACAAATGGTTTATCTTTCTCAGGGATGGAGAGTGCTAATTTGGGCAAGAGCCATTCATATGGATTCTGAATATTACCCAAATCCAGAAGAATTTAATCCATCGAGATGGGATGATTACAATGCCAAAGCAGGAACCTTCCTTCCTTTTGGAGCAGGAAGTAGACTTTGTCCTGGAGCCGACTTGGCGAAACTTGAAATTTCCATATTTCTTCATTATTTCCTCCTTAATTACAGGTTGGAGCGAGTAAATCCAGAATGTCATGTTACCAGCTTACCAGTATCTAAGCCCACAGACAATTGCCTCGCTAAGGTGATGAAGGTCTCATGTGCTTAGCTAGTCTCGATCGAGCAAAATCGAGTTACGAAGCACACTTGATTATTATAAAATAAATAAATAATTGCTTCTTATGTCTCCACGAGGTCCGGGTTTCAAGGAATAAGCTCTTCGATTAACATCTCTCCCAATTGTTGCTGTCATCTTCAAGAATTGTTTGGATGTTGCCCTTGTCCTGTTTCCTCTGCGCCTATTGCACTGTTTTAGTTGTAGTGCGAGTCTAATTTTGTAAAAGGGGTCCTTTAATTTATGTGGTTAATTTCATTAATTCCATTGGATTACCAGAACTGCTGTATCTTATTTATTTCCTCTTGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00561	103206	107971	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP88A4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04123	KAO	EC:1.14.13.79	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000561s00023443.1	PF00067.17	p450	54	171	5.20E-22
Glyur000561s00023443.1	PF00067.17	p450	171	246	1.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	343.682
SRR1783600	control	333.688
SRR1783602	moderate drought stress	284.959
SRR1811619	moderate drought stress	273.207

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	168.380
DRR006520	Root Summer glycyrrhizin high producing strain	161.078
DRR006521	Root Winter glycyrrhizin high producing strain	0.265
DRR006522	Root Winter glycyrrhizin high producing strain	0.436
DRR006523	Root Summer glycyrrhizin low producing strain	18.680
DRR006524	Root Summer glycyrrhizin low producing strain	19.488
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.355
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.307

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.863
SRR2868004	Drought Stress (root)	8.386
SRR2967015	Control (root)	9.058

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.026
SRR9715740	Leaf	0.257
SRR9715741	Leaf	1.127
SRR9715739	Root	54.772
SRR9715742	Root	143.582
SRR9715743	Root	130.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	212.575
SRR8400027	Control - Root	265.258