Gene detail information of Glyur000561s00023442 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04560.1 | 7.00E-153 | transferases, transferring glycosyl groups |
| NR | KEH18186.1 | 0 | lipid-A-disaccharide synthase [Medicago truncatula] |
| COG | YP_002297421.1 | 3.00E-85 | lipid-A-disaccharide synthase [Rhodospirillum centenum SW] |
| Swissprot | tr|F4IF99|LPXB_ARATH | 0 | Probable lipid-A-disaccharide synthase, mitochondrial (Precursor) |
| trEMBL | tr|A0A072TLS9|A0A072TLS9_MEDTR | 0 | Lipid-A-disaccharide synthase {ECO:0000313|EMBL:KEH18186.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00561 | 98972 | 102401 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT19 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00748 | lpxB | EC:2.4.1.182 | Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000561s00023442.1 | PF02684.10 | LpxB | 53 | 437 | 1.80E-72 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.292 |
| SRR1783600 | control | 12.679 |
| SRR1783602 | moderate drought stress | 9.064 |
| SRR1811619 | moderate drought stress | 8.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.755 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.675 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.139 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.970 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.801 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.943 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.965 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.016 |
| SRR2868004 | Drought Stress (root) | 12.772 |
| SRR2967015 | Control (root) | 12.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.282 |
| SRR9715740 | Leaf | 7.680 |
| SRR9715741 | Leaf | 5.869 |
| SRR9715739 | Root | 3.895 |
| SRR9715742 | Root | 5.860 |
| SRR9715743 | Root | 6.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.566 |
| SRR8749028 | MeJA induced 9h | 9.005 |
| SRR8749029 | MeJA induced 9h | 5.999 |
| SRR8749030 | Uninduced | 8.601 |
| SRR8749031 | Uninduced | 5.234 |
| SRR8749032 | Uninduced | 3.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.766 |
| SRR8400027 | Control - Root | 23.029 |