Gene detail

Gene detail information of Glyur000561s00023432.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13040.1	2.00E-37	Integrase-type DNA-binding superfamily protein
NR	KEH18135.1	4.82E-115	ethylene response factor [Medicago truncatula]
Swissprot	tr\|Q56XP9\|ERFL1_ARATH	1.00E-47	Ethylene-responsive transcription factor-like protein At4g13040
trEMBL	tr\|A0A072TX66\|A0A072TX66_MEDTR	2.00E-115	Ethylene response factor {ECO:0000313\|EMBL:KEH18135.1}

Sequence

Transcript Sequence

>Glyur000561s00023432.1
AACCAAACTACCATCATAGCACATAGAAGAAGCAGCAACAACAACAACGTTGTCACTCTCTCTCTCTTCACACCATCACACACCACCACCCTTCCAAATAAGACACACAAAAACACGGGAAAAATCACAAGGGTGTGTTGTAAGATGCATCACTAACAACAAAATACATTGTAATCCACCTCATATGTCACACCACCCTCACCACCACCTTCTCTAGCACACACACACACACACACACAGAGTTATACATACATATCCTCTGCCATACAGTGTTTTCTCAAGAGGGGGCAACAACAACAACAATGGCTTATCTGGGGTATTTTGTTCAGTTGTAGGTACTCTACCTTCTGTATTGAAGGGAAGTCTGGTATCATAACAAGTTAACCACTGTGCTCTTGATAGTAGACTGGAAGTAACAATGGTAAGCTTGAGAAGGCGCAGACTTTTGGGATTATGCTCAGGAAACAATTCATTTGTCACTCCACTTCCTCTCTACTGTGAGAATCTAACTGGTTGTGAAAAAACAAGCCAGCGTGCCAATCCTAAGAGCGAACAATCTGTGGTTTCGGAAATNGCAAGCGTCCTGGACAGTAATACCATTGTGAAAGACGAATCAGGATCATCAAATGTATCTGGTTCTAGCCCATCTAAAGAGCAACCTAGTCATCAAAGCATAGGGCCTCCTGTTAAACGCAGAAAGCGACATTCAAGAAAACCTAGAAATAACCAAGAACCATGCTTAATGAGAGGGGTCTATTTCAAAAATATGAAGTGGCAGGCAGCAATAAAAGTGGACAAGAAACAGATCCACCTAGGGACTGTTGCGTCGCAGAAAGAAGCTGCTCACTTATATGACAGGGCTGCTTTCATGTGTGGAAGAGAGCCCAATTTCGAGCTTCCTGAAGAAGAAAAGCGGGAACTGAGTAAGTTCAAGTGGGAAGAATTCTTGGCGATGACTCGGCAGTCAATTACCAGTAAAAAACAAAAGAGAAGGCATAGTCCAGGACCGCACGAACCTTCGTTGCGCAGAGGTGATTGTGACAGTAAGCAAGGAGTGAGTGACTTCTCTGTTAGCGGAGATGCGGAGCAAGAAACAGCATTCTCTGGAAACACATGATTCAAGAATAAAGCATGAGGAGGGAACCTCCAGTTATAACAGTTCTATTTTTGCTACCAGATCCATTCTCAATTTTATGATCCCCAAGATAATCAAAATAATAGAGCTTAACCAATAAATAGTATATGGCACCACCAGTTCATCAGACTATTGCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00561	24534	28781	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000561s00023432.1	PF00847.15	AP2	109	150	7.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.468
SRR1783600	control	12.694
SRR1783602	moderate drought stress	10.048
SRR1811619	moderate drought stress	9.666

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.676
DRR006520	Root Summer glycyrrhizin high producing strain	7.484
DRR006521	Root Winter glycyrrhizin high producing strain	32.466
DRR006522	Root Winter glycyrrhizin high producing strain	30.495
DRR006523	Root Summer glycyrrhizin low producing strain	5.667
DRR006524	Root Summer glycyrrhizin low producing strain	4.202
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.825
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.023

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.769
SRR2868004	Drought Stress (root)	11.253
SRR2967015	Control (root)	10.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.388
SRR9715740	Leaf	16.073
SRR9715741	Leaf	17.923
SRR9715739	Root	1.801
SRR9715742	Root	9.050
SRR9715743	Root	6.644

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.502
SRR8749028	MeJA induced 9h	28.117
SRR8749029	MeJA induced 9h	41.092
SRR8749030	Uninduced	36.138
SRR8749031	Uninduced	19.688
SRR8749032	Uninduced	20.926

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.695
SRR8400027	Control - Root	14.802