Gene detail information of Glyur000560s00027514 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34640.1 | 7.00E-12 | peptidases |
| NR | NP_001238647.1 | 9.20E-64 | uncharacterized protein LOC100499705 [Glycine max] |
| trEMBL | tr|C6SVQ4|C6SVQ4_SOYBN | 3.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G11070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00560 | 140872 | 141837 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000560s00027514.1 | PF06645.8 | SPC12 | 8 | 65 | 4.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.108 |
| SRR1783600 | control | 0.033 |
| SRR1783602 | moderate drought stress | 0.203 |
| SRR1811619 | moderate drought stress | 0.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.790 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.324 |
| SRR2868004 | Drought Stress (root) | 0.094 |
| SRR2967015 | Control (root) | 0.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.518 |
| SRR9715740 | Leaf | 25.500 |
| SRR9715741 | Leaf | 18.734 |
| SRR9715739 | Root | 0.221 |
| SRR9715742 | Root | 0.296 |
| SRR9715743 | Root | 0.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.199 |
| SRR8400027 | Control - Root | 1.283 |