Gene detail

Gene detail information of Glyur000560s00027511

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34580.1	4.00E-167	Major facilitator superfamily protein
NR	XP_003526585.1	0	PREDICTED: sugar transport protein 5-like [Glycine max]
COG	YP_745085.1	6.00E-52	sugar-proton symporter [Granulibacter bethesdensis CGDNIH1]
Swissprot	tr\|Q93Y91\|STP5_ARATH	0	Sugar transport protein 5
trEMBL	tr\|I1K9Z3\|I1K9Z3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G10900.1}

Sequence

Transcript Sequence

>Glyur000560s00027511.1
ATGCCCGGTGGGGGATTCGCCACTGATGCACCAGCCACTCCCACTACTGGCTTCGATAGCAAGATAACNCTACCGGTTGTGATCACTTGCATTGTTGCTGCATCCAGTGGACTCATTTTTGGATATGACCTCGGAATTTCAGGAGGGGTCACTACGATGATGCCATTTCNCGAAAAATTCTTCCCTGAAATACTAAAAAAGGCTGCAAGTGCCGAAACAAACATGTATTGCGTGTATGATAATCAACTATTGACGTTATTCACATCCTCCCTATATCTAGCTGGGTTAGTGACTTCTCTAGTAGCTAGTCGGATCACAAAGGCATTTGGTCGTAGAAACACCATCATGTTGGGTGGTACCATCTTCCTTGTGGGTGGCGCCATTAACGGAGGTGCTCAAAATATTGCTATGCTCATCATTGGTCGTGTCCTTCTCGGCTTTGGGATCGGTTTCACTAATCAAGCTACTCCATTGTACCTTTCGGAAATCGCTCCACCAAAATGGCGAGGAGCATTAAGCACAAGCTTTCAATTCTTCGTACAAGTTGGCGTGGTGGTTGCAGGCTGCGTAAACTACGCTACCGCCAAACACACATGGGGGTGGAGACTCTCCCTTGGCCTTGCGGTGGTGCCAGCAATACTGATTACAATCGGTGCCTTCATCATATGTGACACACCAAACAGCTTAGTGGATCGTGGCAAAATAGACCAAGCCAGAAAGGCTTTGCACAAAGTGAGAGGTTCAAACACCGATGTGGAGCCTGAATTGGAAGAACTCGTTAGATGGTCAGAATTTGCAAAATCTGTGAAGAAGGAACCCTTTGTGACTATATTTGAGAGACNGTATAGGCCTCACTTGGTGATTGCAATTGCCATCCCGCTTTTTCAGCAGCTGACTGGGATCAANATGGTCGCGTTCTATGCACCTAACCTCTTTCAATCTATGGGTTTTGGTAATGATGCGGCTTTGCTTTCTTCTGTTATTATTGGAGTCGTTAACATTGGTGCACTTCTCATCTTCTCTGCTATTATTGATCGTGTTGGTCGGAGAGTCTTGTTCGTAGTGGGTGGCACTGTGATGCTTGTTTGTCAGAACCACAGGGCAGAGCATAGCTGTTGCGGTGCAGTTCATTACCATATTCATCTTGTCCCAGACATTCTTGACAATGCTGTGTCACTTCAAGTTCGGCGCTTTCTTGTTCCACGCGGGTTGGATTGTTGTCATGACCCTCTTTATTATACTTTTCTTGCCCGAGACCAAAGGACTTCATCTGGATTCAATCTATTCCGTATGGAGCAAACACTGGTTTTGGCGCAGAAACCTAGGGTTCTTCTTCCTTCACTCTTCACCCCACTCAGCCGCCGCACCTCTAAGTCCTTCCTCCGGCCACCGCCGCTGGAGCCAGCCACCACCGGCTCGTTTACCGAGCCAGAGGTTCAGCGCCTTCGCGTCTTCAGCTGTCTTCGCGTCCTCCTTCCCATTCGCGTCGTTCACCACTGTCTCGCGTCCTCCTTCCCAGGCCGCCAGCCACCGCGCGAGTCTCAGCCGTCCTCCGCCAGCCACTGTCTCGCGTCCAGAGGTTCAGACCCTGGCTGCTGGTACTTGGAAAGCAGAGATCACAGACAGGGGTTCAAAATGGCGGGTGGGGGATTCGCCGTTGATGCACCGTCCAATGGCTTCGATGGCAAGATAACACTCTCAGTTCTCATCACTTGCATCGTTGCTGCATCCAGTGGACTCATTTTTGGATATGACATTGGAGTTTCAGGAGGTGTCACAACGATGGTGCCGTTTCTCAAAAAGTTCTTTCCAGATATTCTAAGAAAGGCTGCTAGTGCGAACGTAAACATGTATTGTGTGTATGATAGTCAAGTGTTGACATTATTCACATCTTCTCTGTATCTGGCTGGCTTAGTGTCAACCATTGTTGCTAGCAGAGTCACGGCGGCGATGGGTAGGAGGAACACCATCATGGTTGGTGGTGCCCTCTTTCTTATCGGTGGTGTCATTAATGGCGGTGCTGAAAATATTGCTATGCTCATTGTTGGTCGTGTCCTTCTCGGTCTTGGGGTTGGTTTCACTAATCAAGCTACCCCATTGTACCTTTCTGAAATTGCTCCACCCAAATGGCGAGGCGCTTTCAGCACAGGCTTCCAATTCTTCTTGGGAATTGGTGTTGTTGCCGCAGGCTGCATAAACTATGGCACAGCCAAGCACACATGGGGATGGCGACTCTCTCTGGGACTTGCTGTGGTGCCTGCTGCAATAATGACAATTGGTGCTTTTCTCATAACTGACACACCCAGCAGCTTGGTGGAACGTGGCCAAATAGACCAAGCCAAAAAAGCCCTGCTCAAAATCAGAGGAAATTCCATCGATGTGGAACCTGAGTTGGAAGAACTCATTAGATGGACAGAGATTGCAAAATCAATGGAACAGGAACCCTTTAAGACCATATTTGAGAGACAATATCGACCTCACTTGGTCATGGCTTTCGCAATCCCATTTTTCCAACAGCTCACTGGGATCAACATAGTCGCATTCTATTCCCCTAACCTCTTTCAGTCTGTGGGTTTGGGACACGACACCGCTTTACTTTCTGCCATTATATTGGGACTCGTCAACCTTGCTTCTATCTTGATTCTGGTGTCTGCTTTGCTAGCTGTGGTGACTGGTGTTCATGGTACAAAGGACATATCAAAGGGCAATGCTGTACTGGAATTGCTTTGGAGTCAATGTACACCATATGGGGTAAACATTGGTTTTGGCGGCGGTTTGTTAAAGGAGAAGTCGACAAAGACAATCTTCCATGAAGTAAATGTCACTTTTTTAGCACCAGTCACTGGTGCCTTCGATGGCAAGTTAACACTCTCAATTTTCATCACTTGCATCGTTGCTGCATCCAGTGGACTNCTTTATGGATATGACATCGGAATTTCAGGAGGTGTCACAACTATGGTGCCGTTTCTTGAAAAGTTCTTCCCGGATATTTTGAGAAAGGCTGCCGGTGCAGATGTAAACATGTACTGTGTGTATGACAGTCAAATATTGACGTTATTCACTTCTTCTCTATATCTAGCTGGCTTAGTGTCATCTCTCCTAGCTAGCAGAGTCACGGCGGCNATAGGAAGGAGGAACACCATCATATTGGGCGGTGCCGTCTTTCTTGCCGGTGGTGCCATTAACGGAGGTTCTGAAAATGTTGCTATGCTCATCATTGGTCGTGCGGCACCATTGTACCTTTCTGAAATTGCTCCACCCAAATGGCGAGGCGCTTTCAACTCTGGCTTCCAATTCTTCCTAGGAGTCGGTGTGGTTGCAGCAGGCTGCATAAACTATGGCACCGCCAAGCACACGTGGGGATGGCGAGTCTCTCTTGGACTTGCCGTGGTGCCTGCACTCGTGATGACAATTGGTGCCTTCCTCATAACTGACACACCCAANAGCTTGGTAGAACGTGGCAAAATAGACCAAGCGAGAAAAGCCTTGCGCAAAGCCAGAGGATCCTCCATCGATGTGGAACCTGAGTTGGAAGAACTCATTAAATGGACGGAAATTACAAAATCAATGAAACAGGAACCCTTTATGACCATATTTGAGAGACAGTATCGACCTCACTTGGTCATGGCTTTCGCAATCCCNTTTTTCCAACAGCTCACTGGGATCAACATCGTCGCATTCTATTCCCCTAACCTCTTTCAGTCTGTGGGTTTGGGACACGACGCCGCTTTACTTTCTGCGGTTATATTGGGACTCGTCAACCTTGCTTCTATCTTAGTCTCCACCGGAATTGTTGATCGGTTTGGTCGAAGATTCTTGTTCATAACTGGGGGCATAATGATGTTTGGTACAAACGACATATCAAAGGGCAACGCGATACTGGTATTGGTGCTATTGTGTCTATATTCTGCTGGTTTTGGTTGGTCGTGGGGCCCTCTAACTTGGCTAATTCCAAGTGAGATTTTCCCCTTGAAGATCAGAACCACTGGACAGAGCATAGCTGTTGCTATGCAATTCATAATTGTGTTTGTGTTGTCGCAAACATTCTTGACAATGCTATGCCACTTTAAGTTTGGTGCCTTCTTGTTCTATGCGGGTTGGACTGTTGTGATGACCCTCTTTATTATATTTTTCTTGCCTGAGACCAAAGGAATTGCTCTGGAGTCAATGTACACCATATGGGGCAAACACTGGTTTTGGAGTCGGTATGTTAAAGCAGAAAGTAGCCAAGAAAATNTTCCATGA

Protein Sequence

>Glyur000560s00027511.1
MPGGGFATDAPATPTTGFDSKITLPVVITCIVAASSGLIFGYDLGISGGVTTMMPFXEKFFPEILKKAASAETNMYCVYDNQLLTLFTSSLYLAGLVTSLVASRITKAFGRRNTIMLGGTIFLVGGAINGGAQNIAMLIIGRVLLGFGIGFTNQATPLYLSEIAPPKWRGALSTSFQFFVQVGVVVAGCVNYATAKHTWGWRLSLGLAVVPAILITIGAFIICDTPNSLVDRGKIDQARKALHKVRGSNTDVEPELEELVRWSEFAKSVKKEPFVTIFERXYRPHLVIAIAIPLFQQLTGIXMVAFYAPNLFQSMGFGNDAALLSSVIIGVVNIGALLIFSAIIDRVGRRVLFVVGGTVMLVCQNHRAEHSCCGAVHYHIHLVPDILDNAVSLQVRRFLVPRGLDCCHDPLYYTFLARDQRTSSGFNLFRMEQTLVLAQKPRVLLPSLFTPLSRRTSKSFLRPPPLEPATTGSFTEPEVQRLRVFSCLRVLLPIRVVHHCLASSFPGRQPPRESQPSSASHCLASRGSDPGCWYLESRDHRQGFKMAGGGFAVDAPSNGFDGKITLSVLITCIVAASSGLIFGYDIGVSGGVTTMVPFLKKFFPDILRKAASANVNMYCVYDSQVLTLFTSSLYLAGLVSTIVASRVTAAMGRRNTIMVGGALFLIGGVINGGAENIAMLIVGRVLLGLGVGFTNQATPLYLSEIAPPKWRGAFSTGFQFFLGIGVVAAGCINYGTAKHTWGWRLSLGLAVVPAAIMTIGAFLITDTPSSLVERGQIDQAKKALLKIRGNSIDVEPELEELIRWTEIAKSMEQEPFKTIFERQYRPHLVMAFAIPFFQQLTGINIVAFYSPNLFQSVGLGHDTALLSAIILGLVNLASILILVSALLAVVTGVHGTKDISKGNAVLELLWSQCTPYGVNIGFGGGLLKEKSTKTIFHEVNVTFLAPVTGAFDGKLTLSIFITCIVAASSGLLYGYDIGISGGVTTMVPFLEKFFPDILRKAAGADVNMYCVYDSQILTLFTSSLYLAGLVSSLLASRVTAAIGRRNTIILGGAVFLAGGAINGGSENVAMLIIGRAAPLYLSEIAPPKWRGAFNSGFQFFLGVGVVAAGCINYGTAKHTWGWRVSLGLAVVPALVMTIGAFLITDTPXSLVERGKIDQARKALRKARGSSIDVEPELEELIKWTEITKSMKQEPFMTIFERQYRPHLVMAFAIPFFQQLTGINIVAFYSPNLFQSVGLGHDAALLSAVILGLVNLASILVSTGIVDRFGRRFLFITGGIMMFGTNDISKGNAILVLVLLCLYSAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVAMQFIIVFVLSQTFLTMLCHFKFGAFLFYAGWTVVMTLFIIFFLPETKGIALESMYTIWGKHWFWSRYVKAESSQENXP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00560	93337	120001	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000560s00027511.1	PF00083.19	Sugar_tr	30	363	8.70E-80
Glyur000560s00027511.1	PF00083.19	Sugar_tr	572	883	5.20E-71
Glyur000560s00027511.1	PF00083.19	Sugar_tr	963	1394	2.20E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.936
SRR1783600	control	0.921
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.009

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.360
DRR006520	Root Summer glycyrrhizin high producing strain	0.436
DRR006521	Root Winter glycyrrhizin high producing strain	0.273
DRR006522	Root Winter glycyrrhizin high producing strain	0.238
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.620
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.807

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.652
SRR2868004	Drought Stress (root)	16.240
SRR2967015	Control (root)	16.860

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.257
SRR9715740	Leaf	0.754
SRR9715741	Leaf	0.654
SRR9715739	Root	0.021
SRR9715742	Root	0.182
SRR9715743	Root	0.189

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.016
SRR8749028	MeJA induced 9h	0.029
SRR8749029	MeJA induced 9h	0.012
SRR8749030	Uninduced	0.044
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.572
SRR8400027	Control - Root	9.407