Gene detail

Gene detail information of Glyur000560s00027506

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78140.1	2.00E-122	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_003522802.1	0	PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Glycine max]
COG	YP_003267998.1	3.00E-18	type 11 methyltransferase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8LBV4\|Y1814_ARATH	8.00E-154	Uncharacterized methyltransferase At1g78140, chloroplastic (Precursor)
trEMBL	tr\|I1JVF7\|I1JVF7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G11180.1}

Sequence

Transcript Sequence

>Glyur000560s00027506.1
AGGCACACGTGAAACGTCCACGGTCCACCACTTGGAAGGTCGAAGGTGGTGCTGCGCANACTGCAGTGATTCGAATCGAACTGTGATACCGGCAATGGCCACAGCCACGGGCATAGCGGTTTCCNGTATGTACATGCACACCCCAACGCTCTCTTCATTCACGCACCCCACGCGCTTCTTCTCACCCACTGCTTTCACTGCAAAGTTTCGACTTCGAGCTTCTTCTTCTTCTACGGCTTTTCCTGACACCAAGCCAACAGATTCCATCGTAGTAGTTGAGAATGAAGTCAGTAGCAAGAGCAGCAGCAACTCATTGGCTTGCCCCATTTGTTATGACTCCTTGACATGGACCGGTGATCCCCCTGGTTTGTCCGTAGACACTATCCCTGGAACTACTTTGCAATGTAGCACCTGTCAGAAGACATATATTGGTAACCAAACACATCTTGATCTCACGGCAACAAGTGGGGCTAAGAACTATGGTGAATCGATGCCAGCTTCTACAGAGCTTTTCAGGGTGCCATTGATATCATTTCTCTATGAGAGGGGCTGGCGTCAGACCTTTTCTGTATGGGGTGGTTTTCCAGGTCCTGAGAAAGAGTTTGAACTGATGAAGGGTTTCCTAAAACCAGTATTGGGCGGGAACATCATTGATGCTAGTTGTGCAAGTGGACTATTTTCAAGATTATTTGCGAAAAGTGGACTGTTTTCTTTGGTTGTTGCTCTAGACTACTCAGAGAACATGTTGAGGCAATGTTATGAGTTCATTCAGCAGGAAGATAACTTTCCAAAAGAGAACTTCATCTTGGTTAGAGCAGACATAGCTAGACTCCCTTTTGTTTCAAGTTCTGTTGATGCTGTGCATGCAGGTGCAGCTCTCCACTGTTGGCCTTCACCGTCAGCAGCTGTAGCTGAAGTAAGTCGTGTTTTACGACCTGGAGGTGTCTTTGTTGCAACCACCTACATACTTGATGGGCCTTTTACGGTTCTTCCATTTTTAAGAACACTACGTCAGAATATAAGGCAAGTATCTGGGAGCTATGTCTTNCTCTCTGAACGTGAACTTGAAGATCTCTGCAAGGCGTGTGGGCTGGTTGGATTTAAATGCATTAGAAATGGGCTTTTTGTGATGATTTCTGCTGCAAAGCCCAAATAAGATAAAAAAGCCGCAAGGTGGTCTGCTAAAAGTTGTGGTTTGACTTAGAACAATAAAGATACACTTCATATAGAAAAATGAGATTCAGACATACATTTTTGCCTTAGATTACTCGCATATCATGAGTTTGGAAGAGCAGTATGACATGCAAAAGACGACGAGTTTCAATGGATGGTGAAAAAAAAAGTCTCCAGTCATGATGATATGTGAGAAATATGAGGCAAAAGTTATCTGTAAATATCATAACTCCCTCATTTGACCCTTCAACTTATTGTCTTTTTGCATTTGATGTATCATAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00560	67953	72009	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000560s00027506.1	PF08241.7	Methyltransf_11	187	286	1.00E-19
Glyur000560s00027506.2	PF08241.7	Methyltransf_11	187	286	1.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.765
SRR1783600	control	3.800
SRR1783602	moderate drought stress	3.876
SRR1811619	moderate drought stress	3.722

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.869
DRR006520	Root Summer glycyrrhizin high producing strain	4.855
DRR006521	Root Winter glycyrrhizin high producing strain	3.159
DRR006522	Root Winter glycyrrhizin high producing strain	3.110
DRR006523	Root Summer glycyrrhizin low producing strain	4.558
DRR006524	Root Summer glycyrrhizin low producing strain	4.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.131
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.590

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.261
SRR2868004	Drought Stress (root)	9.046
SRR2967015	Control (root)	9.008

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.816
SRR9715740	Leaf	46.708
SRR9715741	Leaf	31.975
SRR9715739	Root	1.314
SRR9715742	Root	2.309
SRR9715743	Root	1.998

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.484
SRR8749028	MeJA induced 9h	4.947
SRR8749029	MeJA induced 9h	3.585
SRR8749030	Uninduced	1.350
SRR8749031	Uninduced	0.537
SRR8749032	Uninduced	1.499

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.966
SRR8400027	Control - Root	9.285