Gene detail information of Glyur000560s00027503 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78120.1 | 1.00E-105 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004500618.1 | 0 | PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Cicer arietinum] |
| COG | YP_004384202.1 | 9.00E-18 | TPR-repeat-containing protein [Methanosaeta concilii GP6] |
| Swissprot | tr|Q9SIN1|TTL3_ARATH | 6.00E-120 | Inactive TPR repeat-containing thioredoxin TTL3 |
| trEMBL | tr|K7KUC7|K7KUC7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G10970.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00560 | 54856 | 58935 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000560s00027503.1 | PF13414.1 | TPR_11 | 206 | 271 | 6.00E-15 |
| Glyur000560s00027503.1 | PF00515.23 | TPR_1 | 274 | 298 | 0.0038 |
| Glyur000560s00027503.1 | PF13414.1 | TPR_11 | 439 | 502 | 2.00E-14 |
| Glyur000560s00027503.1 | PF00085.15 | Thioredoxin | 588 | 641 | 2.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.998 |
| SRR1783600 | control | 0.978 |
| SRR1783602 | moderate drought stress | 1.199 |
| SRR1811619 | moderate drought stress | 1.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.988 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.924 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.091 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.089 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.043 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.045 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.610 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.769 |
| SRR2868004 | Drought Stress (root) | 18.199 |
| SRR2967015 | Control (root) | 11.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.671 |
| SRR9715740 | Leaf | 2.537 |
| SRR9715741 | Leaf | 1.866 |
| SRR9715739 | Root | 2.373 |
| SRR9715742 | Root | 26.200 |
| SRR9715743 | Root | 22.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 46.832 |
| SRR8749028 | MeJA induced 9h | 159.765 |
| SRR8749029 | MeJA induced 9h | 125.797 |
| SRR8749030 | Uninduced | 82.266 |
| SRR8749031 | Uninduced | 28.417 |
| SRR8749032 | Uninduced | 59.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.539 |
| SRR8400027 | Control - Root | 45.645 |