Gene detail

Gene detail information of Glyur000560s00027501

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65140.1	6.00E-127	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_003527912.1	0	PREDICTED: probable trehalose-phosphate phosphatase J-like isoform X1 [Glycine max]
COG	YP_003269585.1	1.00E-56	trehalose-phosphatase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q5HZ05\|TPPJ_ARATH	1.00E-156	Probable trehalose-phosphate phosphatase J
trEMBL	tr\|I1KA05\|I1KA05_SOYBN	0	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}

Sequence

Transcript Sequence

>Glyur000560s00027501.1
GTGAACCAAGTCTGAATTTTTTTCCCACCCCTCAACTTTTTTTCTTNCTATAAATTAAAGCCCCCAATTGAGCAGAGTAACAAGCCACGTACACTACAATACTCGCAATCTCTTCTCTACTCTGTTTTTTCCTACNCCTTTTATTTCCATTACTCTGAACTTTGAAGGGAATTTAGCTACTGATTAAGATGACGAACCAGAATGTGGTGGTGACTAGTANTTCTCCTGAAGTGAAGTCATGTATTAACACGCTTATTGCGGTGGCAGCGTCCATTTCTGCAAACTCGCCCGTGTTACCGAGTGCAGCGGTGCCGGAATCGCTGGCTCTGCTTGGTGGGTTCTTGGGGTTGCCACACAAGAATCTCATGAAGAGGTTGGAATATTTGGAAGGTGCCAAAGTTAGCGCTTGGATTGATTCAATGAGATCTGCTTCTCCGACACGTGTCAAATCCACCTTGCCCGCTTCTTCTGAAAACCAAGAAAAAAGTTCCTGGATTTTTTATCATCCTCCGGCGCTGAAATTGTTTGATCGCATAATATATAACTCCAAAGGAAAGCAGATTGTGATTTTTCTTGACTATGATGGAACTCTCTCCCCGATTGTTGCAGATCCAGATAAAGCTTTCATGACTAGAAAGATGAGAGCGACGCTGAAGGACATAGCGAGACATTTTCCCACAGCAATCGTGACCGGAAGGTGCAGAGACAAGGTATTTAACTTTGTAAAACTGGCAGAACTGTACTACGCAGCAAGCCATGGAATGGACATCATGGGGCCAACAAAAAGCCGAAGTGATGATGAGAAAAGTAATGATATTAATAATAAAGCAGTGCTGTTCCAACCTGCGAGTCAATTCCTGCCCATGATTGATGAGGTGTACAAAATATTGTTAGAAAAAACAAAGTCTGTCCCAGGGGCTAAGGTAGAGAACAACAAATTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCCACATTGGCAGAGAAAGTTCGANTGGTGCTCAATGAATACCCANAACTTAGGCTAACCCAAGGAAGAAAAGTGCTAGAGATCCGTCCAACCATTAAATGGGACAAAGGCAAGGCTCTTGAATTCTTNTTAGAATCGTTAGGATACGAGAATTCTAATGATGTGTTTCCAATCTATATCGGCGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGCGGAGAAGGGGACAAGGGACTGGGATTCTTGTTTCTAGAGTTCCAAAAGAAACAGATGCTTCCTACACCTTGCAGGATCCATCAGAGGCAAGTCCAATATATCCAACAAAATTTGTTGAGCTATTTTTGCGGCGTTTAGTGGAGTGGAAAAGATCGAGTACTGTGACCCCCACAAATGTATANAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00560	15812	18358	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01087	otsB	EC:3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000560s00027501.1	PF02358.11	Trehalose_PPase	128	366	2.20E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.264
SRR1783600	control	16.294
SRR1783602	moderate drought stress	15.627
SRR1811619	moderate drought stress	15.596

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.757
DRR006520	Root Summer glycyrrhizin high producing strain	7.832
DRR006521	Root Winter glycyrrhizin high producing strain	0.160
DRR006522	Root Winter glycyrrhizin high producing strain	0.156
DRR006523	Root Summer glycyrrhizin low producing strain	15.691
DRR006524	Root Summer glycyrrhizin low producing strain	16.826
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.062
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.809
SRR2868004	Drought Stress (root)	24.758
SRR2967015	Control (root)	21.459

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.028
SRR9715740	Leaf	1.892
SRR9715741	Leaf	2.114
SRR9715739	Root	3.046
SRR9715742	Root	16.287
SRR9715743	Root	13.595

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.084
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.044
SRR8749030	Uninduced	0.364
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.037
SRR8400027	Control - Root	5.954