Gene detail information of Glyur000559s00020532 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41180.1 | 4.00E-07 | VQ motif-containing protein |
| NR | XP_003546708.1 | 1.09E-28 | PREDICTED: uncharacterized protein LOC100783939 [Glycine max] |
| Swissprot | tr|O80669|SIB2_ARATH | 1.00E-08 | Sigma factor binding protein 2, chloroplastic (Precursor) |
| trEMBL | tr|I1MIN5|I1MIN5_SOYBN | 4.00E-29 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G37230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00559 | 144151 | 144534 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000559s00020532.1 | PF05678.9 | VQ | 23 | 52 | 1.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.304 |
| SRR1783600 | control | 4.249 |
| SRR1783602 | moderate drought stress | 4.697 |
| SRR1811619 | moderate drought stress | 4.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.283 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.280 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.235 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.472 |
| SRR2868004 | Drought Stress (root) | 36.498 |
| SRR2967015 | Control (root) | 25.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 124.348 |
| SRR9715740 | Leaf | 94.016 |
| SRR9715741 | Leaf | 172.466 |
| SRR9715739 | Root | 6.111 |
| SRR9715742 | Root | 5.123 |
| SRR9715743 | Root | 4.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.776 |
| SRR8749028 | MeJA induced 9h | 36.866 |
| SRR8749029 | MeJA induced 9h | 9.479 |
| SRR8749030 | Uninduced | 36.444 |
| SRR8749031 | Uninduced | 30.523 |
| SRR8749032 | Uninduced | 32.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.395 |
| SRR8400027 | Control - Root | 24.228 |