Gene detail

Gene detail information of Glyur000559s00020531

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12260.1	3.00E-46	LYR family of Fe/S cluster biogenesis protein
NR	XP_003627929.1	7.70E-72	NADH dehydrogenase [Medicago truncatula]
Swissprot	tr\|Q9LHI0\|NDUA6_ARATH	4.00E-58	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
trEMBL	tr\|B7FMX5\|B7FMX5_MEDTR	3.00E-72	Uncharacterized protein {ECO:0000313\|EMBL:AFK41251.1}

Sequence

Transcript Sequence

>Glyur000559s00020531.1
AGTAAATTGGAGTGGTGGACGAATTTTATGGCTATGGCTACTAAGGTGCTANATTGCTGCTACGTGTGAAACCCACATTAAAAACGACGCCGTATGGCTCGTGTCCCCCACAGACCACACTCNCTAGTTGTTCGATCTATAGTTCTCTCGCACTTTGGGTTGGGAAAAACAAAAACGAAAAAGGCAGAAGGGAGCGAGTGAGTGAGTTGGAAATATGGCGCATTGGCTTCGGAACGCGAAGGTGCCACCGAACTCGGCGAGTATGGAGGAAGCGCGTCAACGGGTGTTCGAGTACTTCAGAACGGCGTGCAGATCGTTACCCGCCGTCATGGAAATTTACAACCTATACGACGTCACTACCATCTCCCAGCTTCGCTCCACCATCGCCTCCGAGATCCGCAAAAACACTCACATCACCAACCCCAAGGTGATTGATATGCTGATTTTCAAGGGGATGGAAGANCTGAAGAATGTTGTGGAGCATTCAAAGCAGAGGCATCATATCATTGGTCAGTATGTAGTTGGCCAGCATGGGCTTGTGCAGGAGGCCAACGATTTGGCCACGAAAGACCTGGGCGCCTCTAATTTTCTGAAGAATTTCTACAAAACCAATTACTTTTGAAGTTTGGTCATGAGTTGTTCTCTGTTTCCTCAAATAAAGAGTTATCTTAAATGTTATGTCAATACTGGCTGAAGATAATATATTGTTGGTTTCAGATCAAAGTCAAACTGCTACATTAATTTTTCGTGGCTTAATTTGAGAAAGTGATGTTTTGCTGATTGTTGTGCACATCACATGTGCATACTGCTGAAAGTGTTGATTTACATATTACCATTTGATGTCATTGCAAGTGATAAAGATTGTCCCAAATGAATAATATTGGCATGGCATCTTAGAGTAAGAATAATTGTATTTTGAGTAATGCCATGATATTAGGTCTTTCCAATATGCGGGTGCTAGTTGTTTATTCTCTGCTCCGGGGTGGAGGGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00559	138489	141464	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000559s00020531.1	PF13233.1	Complex1_LYR_2	27	115	5.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.127
SRR1783600	control	44.599
SRR1783602	moderate drought stress	35.828
SRR1811619	moderate drought stress	35.584

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	71.570
DRR006520	Root Summer glycyrrhizin high producing strain	70.423
DRR006521	Root Winter glycyrrhizin high producing strain	30.673
DRR006522	Root Winter glycyrrhizin high producing strain	29.443
DRR006523	Root Summer glycyrrhizin low producing strain	41.583
DRR006524	Root Summer glycyrrhizin low producing strain	41.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.150

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	154.483
SRR2868004	Drought Stress (root)	118.034
SRR2967015	Control (root)	99.920

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	70.334
SRR9715740	Leaf	57.885
SRR9715741	Leaf	59.117
SRR9715739	Root	99.654
SRR9715742	Root	62.865
SRR9715743	Root	71.340

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	65.648
SRR8749028	MeJA induced 9h	41.967
SRR8749029	MeJA induced 9h	53.130
SRR8749030	Uninduced	17.578
SRR8749031	Uninduced	7.584
SRR8749032	Uninduced	29.309

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	113.385
SRR8400027	Control - Root	110.634