Gene detail information of Glyur000559s00020516 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G64600.1 | 1.00E-179 | methyltransferases;copper ion binding |
| NR | XP_004511078.1 | 0 | PREDICTED: methyltransferase-like protein 17, mitochondrial-like isoform X1 [Cicer arietinum] |
| COG | YP_592105.1 | 4.00E-38 | hypothetical protein Acid345_3030 [Candidatus Koribacter versatilis Ellin345] |
| trEMBL | tr|V7AJF6|V7AJF6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW05674.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00559 | 41895 | 48591 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000559s00020516.1 | PF09243.5 | Rsm22 | 203 | 451 | 6.20E-49 |
| Glyur000559s00020516.1 | PF09243.5 | Rsm22 | 539 | 604 | 3.80E-06 |
| Glyur000559s00020516.2 | PF09243.5 | Rsm22 | 203 | 578 | 3.20E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.406 |
| SRR1783600 | control | 5.474 |
| SRR1783602 | moderate drought stress | 8.022 |
| SRR1811619 | moderate drought stress | 8.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.089 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.188 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.976 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.523 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.259 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.323 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.043 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.190 |
| SRR2868004 | Drought Stress (root) | 8.602 |
| SRR2967015 | Control (root) | 7.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.323 |
| SRR9715740 | Leaf | 7.064 |
| SRR9715741 | Leaf | 3.658 |
| SRR9715739 | Root | 2.826 |
| SRR9715742 | Root | 6.585 |
| SRR9715743 | Root | 4.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.722 |
| SRR8749028 | MeJA induced 9h | 8.807 |
| SRR8749029 | MeJA induced 9h | 7.247 |
| SRR8749030 | Uninduced | 2.111 |
| SRR8749031 | Uninduced | 1.101 |
| SRR8749032 | Uninduced | 1.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.606 |
| SRR8400027 | Control - Root | 8.917 |