Gene detail

Gene detail information of Glyur000558s00030270

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53490.2	2.00E-76	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	AFK40441.1	7.39E-140	unknown [Lotus japonicus]
COG	YP_007045856.1	7.00E-16	low-complexity protein [Cyanobium gracile PCC 6307]
Swissprot	tr\|P81760\|TL17_ARATH	2.00E-93	Thylakoid lumenal 17.4 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|I3SJJ9\|I3SJJ9_LOTJA	3.00E-140	Uncharacterized protein {ECO:0000313\|EMBL:AFK40441.1}

Sequence

Transcript Sequence

>Glyur000558s00030270.1
GAAAGTCCCAAACCCGAAGTGAAGAGAGAAAACAATGGCCAACGTTTCAATTCCACTCCCGCGAAACGGTTTGTCCATACGCAACTNCTCAACGAAACGCCACCGTCGTTTCACCACTTCAGCTTCCACGCTCAGAATCACTTGCTCTGGAGGAGATGAGTTAGATGGATCTGAGAGTAAAGCAGGTTTACTTAATTTCAACAGAGTCAAGGGCGTGGCCTGTGGTATTCTTGCAGCTTGCACTGTTGCTTCTTCTGCATTCCCCGTTACTGCTGCTAACCAGTACCGAAGCAGGTTACAAGTACTGAACTTATTAGGTGCTTTGTCAAAGGAAATAGCAAAGGCATTAGAGACAGATTTTACTCTGAAGATATCAACTGAGAGGCTGCCCCCATTGTCAACTGACCCCAATCGCTGCGAGCGTGCATTTGTTGGCAACACAATTGGTCAGGCAAATGGTGTGTATGACAAACCATTAGATCTCAGGCTCTGTGATTTCACNAATGAAAAATCCAACCTGAAGGGGAAGTCCCTGTCTGCAGCACTAATGTCAGATGCCAAGTTTGATGGTGCTGACATGTCTGAAGTCGTAATGTCAAAGGCTTATGCTGTTGGTGCCAGCTTTAAAGGTGTGGACTTCTCAAATGCAGTGTTGGACCGTGTTAACTTTGGGAAAGCTGATCTTCAAGGAGCTGTATTCAAAAACACAGTTTTGTCAGGCTCCACCTTTGATGATGCTAAGCTAGAAGATGCAGTTTTTGAGGACACCATCATTGGTTACATTGATCTCCANAAGCTATGTACAAATAAGACCATCGGTGATGATTGGAGAGTTGAACTAGGATGTCGATGATGATGATGATGATGAGCAATGTCTTTATTCAATGTCTTCTTTTTTTTCTTGTAAGCTGCTATATATATACCATGATGACATGACAGATATTTTGGTGAGGGGAACTAGTAATGTATGCTACATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00558	78904	82608	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000558s00030270.1	PF13599.1	Pentapeptide_4	195	252	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.171
SRR1783600	control	4.147
SRR1783602	moderate drought stress	6.538
SRR1811619	moderate drought stress	6.609

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.192
DRR006520	Root Summer glycyrrhizin high producing strain	10.981
DRR006521	Root Winter glycyrrhizin high producing strain	7.591
DRR006522	Root Winter glycyrrhizin high producing strain	7.438
DRR006523	Root Summer glycyrrhizin low producing strain	7.665
DRR006524	Root Summer glycyrrhizin low producing strain	7.339
DRR006525	Leaf Summer glycyrrhizin high producing strain	92.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	91.383

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.846
SRR2868004	Drought Stress (root)	3.995
SRR2967015	Control (root)	4.522

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.806
SRR9715740	Leaf	76.568
SRR9715741	Leaf	45.578
SRR9715739	Root	7.078
SRR9715742	Root	5.808
SRR9715743	Root	4.967

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.398
SRR8749028	MeJA induced 9h	4.734
SRR8749029	MeJA induced 9h	1.619
SRR8749030	Uninduced	1.423
SRR8749031	Uninduced	0.157
SRR8749032	Uninduced	1.339

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.602
SRR8400027	Control - Root	12.187