Gene detail

Gene detail information of Glyur000558s00030266

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27800.1	5.00E-122	thylakoid-associated phosphatase 38
NR	XP_004502679.1	0	PREDICTED: protein phosphatase 2C 57-like [Cicer arietinum]
Swissprot	tr\|P49599\|P2C57_ARATH	4.00E-151	Protein phosphatase 2C 57
trEMBL	tr\|A0A072V0D5\|A0A072V0D5_MEDTR	0	Protein phosphatase 2C-like protein {ECO:0000313\|EMBL:KEH35464.1}

Sequence

Transcript Sequence

>Glyur000558s00030266.1
TAGAATCTAATCCCATGAGAGAATCCAATCCGTTAAAGCAGTTAGAGGCTTGTATTAACTCACTTATCTAACCCCACCTTCCCCCAAACACTACCACAACACAACTAACTCTCTCAAGCCTCACCTTCAGAGTCTTCAGACTCTGAATTAGTTTCACCTTTCCAATGGCGTTGTCAAGCCCACAAACACAAAGATTCAACCTTTTAAGCAAGCTCCATAGCCATAGCCATAGCAATACTCGCTCCAACTCCAAACAGAACCTCCAGAGTCACAGAAAGTTCAGCTTCAGCAGCATTAGGAGGAGTAGAAGAAGAAGTGGGTGCTGTTCTGCCATAGCAATCGATGCACCATCATCATCTTTGACTGAAGCTCCTGCTATAAGATGGGGATCTGTTGCTTTGCAGGGTCCCCGTGAAGAGATGGAAGACGATATCATTCTTCGACCCAATGACCCTCTTGATGGCTTCTCTTTTGCTGCTGTCTTTGATGGCCATGGTGGCTTCTCTTCCGTCCAGTTCCTCAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTCTACAAGGCGGGTTACTGTTAGTTGGGAAAGATGTCAAAGCCGTTAAAGAAGCATTGCAGGAGGCATTTGTCAAAGCTGACATGAGGTTGTTAAAATGGTTTAGACAGTGTTTCATTTTTAAAAGGCTTGAAATGAATGGGGAGGAGGACGAATCAGGNGCTACAGCAACTGTGGTGTTCATAGGAGGAGATAAGCTGCTAATTTCACATGTTGGTGACTCATCTGTGGTTCTATGCAGATCTGGAAAAGCAGAAGTGCTGACTAGTCCTCACCGTCCATATGGGAACAACAAGAGTTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGCTTGTCAATGGTAGAATTTGTGGAGACATTGCTATATCTCGTGCATTTGGGGACTTGCGATTCAAAACAAAGAAGAATGAGATGCTACGAAAAGGAGTTCAGGAAGGAAGATGGTCAGAAAAGTTCATTTCTCGTGTACAGCTCAACAATGACTTGGTTGTTGCATGCCCTGATATTTATCAAGTAGCTCTTGGCTCTGATGCAGAATTTGTAGTGTTAGCATCTGATGGCTTATGGGATTACATGAGCAGCTCTGATGCAGACCGACGTACACAGGATAATGTCAGCATTATAATTGCCGATTTAGGGAGGACAGACTGGCAGAATGTNCCACTGCAGCAACAAAATGTCATATTTGAGCTAGTCCAAGCCCTTGCCACCATTGGAATTGTGTCTTTTGGAATCTGGTTTTCATCACAGCTTTCTTTATAGATTCAAAAAATAATACTAGTCATGTACATAACCAGATATATATATATATATATATATACTTCTGAACTTCCTGCCTGTATAATCGTAATTGTACATGTCACACATCTCAGAATCTACTTGGTTTAGGGAACTAACTAAAGAATTGTGAAATTTTTGGTTTGCAAGGTTCATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00558	45048	50862	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000558s00030266.1	PF00481.16	PP2C	75	334	2.70E-47
Glyur000558s00030266.2	PF00481.16	PP2C	75	325	8.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.325
SRR1783600	control	1.303
SRR1783602	moderate drought stress	2.342
SRR1811619	moderate drought stress	2.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.344
DRR006520	Root Summer glycyrrhizin high producing strain	2.536
DRR006521	Root Winter glycyrrhizin high producing strain	2.496
DRR006522	Root Winter glycyrrhizin high producing strain	2.317
DRR006523	Root Summer glycyrrhizin low producing strain	2.098
DRR006524	Root Summer glycyrrhizin low producing strain	2.650
DRR006525	Leaf Summer glycyrrhizin high producing strain	107.777
DRR006526	Leaf Summer glycyrrhizin high producing strain	108.304

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.536
SRR2868004	Drought Stress (root)	5.024
SRR2967015	Control (root)	3.023

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	64.734
SRR9715740	Leaf	86.447
SRR9715741	Leaf	69.281
SRR9715739	Root	0.567
SRR9715742	Root	1.876
SRR9715743	Root	1.549

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.060
SRR8749028	MeJA induced 9h	1.705
SRR8749029	MeJA induced 9h	1.037
SRR8749030	Uninduced	1.622
SRR8749031	Uninduced	0.243
SRR8749032	Uninduced	0.687

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.941
SRR8400027	Control - Root	2.692