Gene detail

Gene detail information of Glyur000557s00018794

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01810.3	2.00E-131
NR	XP_004495366.1	0	PREDICTED: uncharacterized protein LOC101504250 isoform X1 [Cicer arietinum]
trEMBL	tr\|G7I4V5\|G7I4V5_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AES61091.1}

Sequence

Transcript Sequence

>Glyur000557s00018794.1
CACGCTTTTCTTTCTTTCTTTTCTGCTATTTTTTTCCTTTTTACTTTTCCTTCTTCTCTTACCCGAGTCTGTTCAACCCGCATTGCTATCAAATTCAATCGNCATCACTTTCTCTCTTCTTCCTTTACAGACACATACATTCTCTCTCGCTTTTTTGCTTTGTGTTTTTTTTTTCAAATGTGTTCCACTCTGTATCAATTTCATTCCACCTAATTTGGTCCTCTCTTTGTGTTAGTCGCATTCCAAACTGAGTTGGCATACCCACCGAGAATAGCAATTTTGTGAAGATGGTTCTGGGAATAAGATCAAAGAGTAGAAAAAGTGTCTCAATCCAAGCTNACTACATCGTCCATGTTCAGGAGATCAAGCCATGGCCCCCTTCACAATCACTGAGGTCTGTTCAATCTGTGCTCCTGCGATGGGAAAATGGTGATNAGAATTCCGGGTCTCTGGCCTCGAGTTCCAGCGATGGAAAAATCGAATTTAATGAACCTTTCAGGCTCCCAGTACTTATGTGGAGAGAAGCATCAAAGAAAGGCAAAAACCGTGAAAATTTCCTGAAGAATTGCTTAGAGTTTCACTTGTATGATAAGACAGCAAAGAGCCAACTCTTGGGATCAGCCTCCATAAACCTTGCAGATTTCGGAATTATTAAGGAAACTAAAGCCATAAGCATTCAGTTGAACTGCAAGAGGAGTTCCAGGCACGCGGCACAACCGTTTCTTTATGTTAGTATTCAGCCATTTGATGTAGAGTGTTCCAGCTCATCACCAAACAGCAACTTGTCAAAAGAGTTGTCACTGGACAGGGAAGGAAGTGAATCTGTATCACAGTCACTTAAAGATGATGATGATGTTGAAATTGCCTCTTTTACTGATGATGACAATGATGATACTCCTTCAGAGACCTTGCAAACTAACAAATCTGCTTCAGAGACTACTGGAGAAAGCATCGAAACCATTGAAGGAGGAACAAAGCGATCTAATGGAGGATTTGTTCTACCCTTAGAAAGTACTACTTCTAGCTGGTTTGGCAACACAAAGGCTGAAGCATCCACACAGGTCAATGGCATCAAATCTCCTTCATCTGTGGTCCTGTGCTNAGGCATGGGAAATGCTTCAAATGGCAGGGCTTCGCCTGAAATTTCTAAGGAATGTGTGAACGTTGATGATGCAAGTTCAGAATTTCAAGAAAGCATTCAACAATCCTATGGGCAAAATATCACCAAGGGTGATATGTTCAAAGCCATATCTCCAGCTTCATGCATTTCATCAAGTATGGAACNACACTTTGAAAGATCTTCCCAATCTCAAGTGACTCCAGAGGATAGCATGACTGCAGAAGATAACACAGAAGACCANAGATATAACAAACACTGTCCCGAGAATGTTAGCAGTGTTTCTAACATTGGTGNGATGGAGGAAAAAAAGAAAATGGACGAGAGAAGAAAAGGACAAGAACAATTTACTGTGAGTAATGAAATTTTAGAAAATGAGCTCATTAATAATATTTCAGATGATGATGATTCTACNAGGAAAGGAAAATTAAATAGTGCTACTCTTCAGCTAAGCAAAAAATCACATAAAGATCCAACAAGTATTTTGATGAATGATAAAGCAGAGGATGCGAGAAATGTAAAGTTTCCTTTACAATCAACTGAGAGCTATGGGCAGTTCATCCGGAGTCAGACCCTGGATCAGGCAGAGGAAATTAATACTTCGAATGGTGTTCATGTTGGTGCTGCATGTCATGAAGACATTAATGTGAATGGAAGCATTCTTAATGATAATGCTGAATTGAAGGCTGAAGTTGAAATGCTTCAAGAAGAGCTGAGGGAAGCTGCTGCTCTTGAAGCTTCAATGTACTCAGTTATCGCTGAACATGGCTCATCAAACAAGGTCCATGCACCTGCTCGGCGCCTTTCTAGATTCTATTTCCATGCTTGTAGAGTTGGCTCCCCTGCTAAAATAGCTAGTGCGGCGCAGAGTGCTGTCTCAGGATTTGTCTTGGTTTCCAAAGCATGTGGACATGATGTTCCAAGGTTGACATTCTGGTTCTCAAACTTAATACTGCTGAGATCAATTGTGAGCAAAGGAGTTGAAAATATAAACCTTGGTGGTGGTCCATGCATCAATAGTGAATGTGAAGAAGAAAAAGAAGATACAGAAAAACACTACCATAGCTGTCAGGATCGAGAGACATTTTTANTTGCATTGGAAAAGGTTGAAGCNTGGATATTCACTCGAATTGTTGAGTCAGTGTGGTGGCAGACTCTGACTCCATATATGCAATCTGCAGCAGCCAAGAGCTCTGGCTCTAGGAAAATATATGGGAGGAAATATCTTATAGGTGATCAAGATCAAGGAAACTTTTCTATTGATTTATGGAAAAGAGCTTTCAAGGATGCATGTGAAAGGCTTTGTCCTCTTCGAGCTGGAGGGCATGAATGTGGCTGCTTGCCTGTGATACCTAGAATGGTGATGGAACAATTGGTTAATAGACTTGATGTGGCAATGTTCAATGCTATTCTTCGGGAATCAGCTGATGAGATGCCCACTGATCCTATATCTGACCCCATTAGTGATTCCAAGGTTCTTCCTATTCCAGCTGGAAAATCGGGCTTTGGGGCTGGTGCACAACTAAAGAATGCTATTGGTGACTGGTCAAGATGGCTTTCACATTTATTTGGCATTGATGATAGTGACTCTCTTGAAGACAACAATGAAAACGATCACCCTAAATATGAATCATCCTTCAAACCTTTCAATCTGCTTAATGCTTTGAGTGATCTAATGATGCTTCCTTCTGAAATGCTTGCGGACGAGTCTACGAGAAAAGAGGTCTGTCCTAGACTTGGCATATCATTGATAAAACAGGTTGTCAACAATTTTGTTCCCGATGAGTTCTCCCCAGGGCCTATCCCAAATGCTGTTCTTGAGGCCCTCAACAATGAGGATATTCAGGATGATGAAGGGTCCATCACAAGCTTTCCATGCACTGCTGATTCCGCATTCTATGAACCACCTTCAGCTTCTTCAGTTGTGGGCATGCTACAAGAAGTGGGAACCCAAACTTTGCTAAGAAGTGGATCATTTGTGCTTAAAACATTATATACCAGTGATGATGAACTTGATGAATTAGATTCACCCCTTTCTGCTCTTTGGCATGGATGACTCTCCACTTGCATCTAAGAAAAAGTTTGCAGTATTACAGGGAGGTCGTAAGGTTGTTCGATATGAGCTTTTGCGAGAAGTGTGGAAGAGTGGTGAATGACATAGATTCAATGATTGTTTTATTCTTTTGTAGATTAACTTAAAATTTAGGCTAGTATATTCAGCTTTTAGTTATTTCAATAAGGGTTCAATATGTGTTTTGTCCCCTATAAAATTATCCGATTTCAATTTTAGTCCCTAATAATTTTTTGACCTTTATGCTTTTTGTCCATTTTCCTTAAGGGAAAACTGTCCTCACTGACAACTTTCCAATGTTGTGTGATGGATGTGTCATTATTATATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00557	115376	123340	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000557s00018794.1	PF10358.4	NT-C2	14	150	1.40E-11
Glyur000557s00018794.2	PF10358.4	NT-C2	14	150	1.40E-11
Glyur000557s00018794.3	PF10358.4	NT-C2	14	150	1.40E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.660
SRR1783600	control	7.653
SRR1783602	moderate drought stress	6.980
SRR1811619	moderate drought stress	6.594

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.030
DRR006520	Root Summer glycyrrhizin high producing strain	12.305
DRR006521	Root Winter glycyrrhizin high producing strain	3.662
DRR006522	Root Winter glycyrrhizin high producing strain	4.684
DRR006523	Root Summer glycyrrhizin low producing strain	18.625
DRR006524	Root Summer glycyrrhizin low producing strain	19.650
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.875

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.188
SRR2868004	Drought Stress (root)	13.895
SRR2967015	Control (root)	8.463

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.561
SRR9715740	Leaf	4.108
SRR9715741	Leaf	8.122
SRR9715739	Root	2.271
SRR9715742	Root	7.496
SRR9715743	Root	7.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.903
SRR8749028	MeJA induced 9h	4.652
SRR8749029	MeJA induced 9h	4.673
SRR8749030	Uninduced	3.312
SRR8749031	Uninduced	5.151
SRR8749032	Uninduced	2.711

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.334
SRR8400027	Control - Root	14.270