Gene detail

Gene detail information of Glyur000557s00018791.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23340.1	0	casein kinase I-like 10
NR	XP_007223111.1	0	hypothetical protein PRUPE_ppa005419mg [Prunus persica]
COG	YP_629724.1	3.00E-16	serine/threonine protein kinase Pkn1 [Myxococcus xanthus DK 1622]
Swissprot	tr\|P42158\|KC1D_ARATH	0	Casein kinase I isoform delta-like
trEMBL	tr\|M5XYH5\|M5XYH5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24310.1}

Sequence

Transcript Sequence

>Glyur000557s00018791.2
GACAGTCATCCATTTTCTCTCCTTTCTTCCTGTTACCTCACATCACCTTTTTCTCTCCATTCTCTCTCTCTCTCTCATCCTCCTTTCTTTTCCTTTTCTTTTCAGAATCTCAAGTTTCTCTTGAGAAAACTCACTCCGTATCCTCAAAGACAGATCCGAAACGGGATGCCAAATCCAATACNCCATCTCTGGGCAACAATATCCTAGCCATTAGATTTCCTTCTTCCTTCCCCTTCCTCACCCTCTTTCTACAGTTTTGCATTTTTCACAGTATTTCATTTTTGTAGAGCAAAATATAGTTCATCTACTCAAAGCTACTCCGATTTTTGTCGTACCCTTTTCGGTATTTTAACTATTTTCTACGAAAAAGAGGAAAAGGGGTTTATTTGAGTAACCCCATAATCGCGATTGTCCTTCGATTCAACGTGCAATTGGGGCTTTCGTAGATTCTAGCTCTTGATCTTATNTTCATTGATCAAAAGGGTTTTTATTTTACCTCTGTCACTTTTTTTGGTTGATTTTTGAGGTATCGGGATTAGTATAGCTTGAATTTTTTTAGTTAGTCAATACACTTTCGGATCCCTGTGTTTATGTTAAATCTCGTTGGATCTGAGATTGTGCTGGAAATAAAGGTGAATCGTTGATGAGACACTCGGGATAGGGAAAAAATAAGTTTTTTTTTCCAATTGATGTTTGTAGTAGAGTGGTTTTGTAATTTAGCAAGGATCAATTGGGTTTGTGAGCATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAANATTGGGAGTGGATCGTTTGGAGAGCTTTACTTGGGTGTTAATGTACAAACTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGGGGAACGGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGCCATGGCTATTGACCTCCTTGGACCAAGTCTNGAAGACTTGTTTAACTATTGCAATAGGAAATTCTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGATAACTTTTTAATGGGTTTAGGCCGTAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGGGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCCCGGTATGCAAGTGTTAATACTCATCTGGGCGTTGAACAAAGCAGAAGAGATGATCTGGAATCACTTGGTTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGATTGAAAGCTGGCACTAAAAAACAAAAGTACGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGAATGTTGCTTTAACAGGCTATCAGTTTGATTATGTGTTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGGCCAAGTGGGAAACCAGTCATAAATCCAGGACAATCAGGAGAGAGAATAGAACGACCTTCAGGTGGACCAGAGATTCGGGACAGATTCTCAGGTGCAGTTGAGGCATTTGCAAGAAGAAATAGCTCTGGGCTTGGTCTTCATAGTGATCATTCTAGGCATAGATCTTCAGATGGNGTGCCATCTTCCAAAGACGTGCAAGCTGATTCTGAGAGGCCTCGTAGCTCTTCTCGAAATGGCAGCTCTTCAAAAAGGCCTATCTTGTCAAGCAGCCGACCAAGCTCTTNTGGCGAGCCTCGTGAAAACCGCTCCAGTCGGCTGGTCTCAAGCAGTAGCCGACTATCTACGACTCAGAGGACTCAATCAGGTTTTGAGTCCAAAACTTCATTTACCCGTGCTTCTGGGACAAGAGGTGGTCGCGANGATACACTCAGAAGCTTTGAACTCCTGTCAATTGGCACAGGAAAAAGGAAATGAAGAACCTGTGTGATCAGCAGACTTCTTAAGGGTCTTAGTTCTACTGTTCTGATACTTTCCCTTTGAGATGTCTACCCTTGTTGACTACTCTGTATATTTCCATCCAATGTTGGGTCCATTCAAGGCTAAAGCTCATTGGAATTTTCTGCATGAAGCTTTGGCAGACTCCTCTTATAGCTCTTCTGATGTTCTTTCCATGAATATTTCAGCATGGACCCATTCATGAAGAGATACTGTTACTTCTGGAATTTGTTAATATATGGCTTCTTGTAATAAATACATCCTCTATTTTTTCTGCTGAAGAAAAGGAAAAGAAACTGCAAAAATGTCTTGCAAGTTGCATCCTTTTTATGCATATTCCGTACCTGACTACTGTGGTCTAACGTACATTGATGTGGTGGAATGGAATTGTTGGCTACAATTATGGATACGTGAAAGAAAAGTGATTGATGTGCATTTAGGCAGTTTGACTNAGATGTGTGTTAATAATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00557	92464	98558	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08960	CSNK1E	EC:2.7.11.1	Wnt signaling pathway	map04310
			Hedgehog signaling pathway	map04340
			Hedgehog signaling pathway - fly	map04341
			Hippo signaling pathway	map04390
			Hippo signaling pathway -fly	map04391
			Hippo signaling pathway - multiple species	map04392
			FoxO signaling pathway	map04068
			Circadian rhythm	map04710
			Circadian rhythm - fly	map04711

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000557s00018791.2	PF00069.20	Pkinase	9	239	1.80E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.625
SRR1783600	control	28.954
SRR1783602	moderate drought stress	25.113
SRR1811619	moderate drought stress	25.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.792
DRR006520	Root Summer glycyrrhizin high producing strain	35.964
DRR006521	Root Winter glycyrrhizin high producing strain	33.162
DRR006522	Root Winter glycyrrhizin high producing strain	32.247
DRR006523	Root Summer glycyrrhizin low producing strain	28.059
DRR006524	Root Summer glycyrrhizin low producing strain	28.261
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.597

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.988
SRR2868004	Drought Stress (root)	51.369
SRR2967015	Control (root)	53.018

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.400
SRR9715740	Leaf	36.424
SRR9715741	Leaf	42.981
SRR9715739	Root	9.914
SRR9715742	Root	34.086
SRR9715743	Root	27.676

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.373
SRR8749028	MeJA induced 9h	16.586
SRR8749029	MeJA induced 9h	12.196
SRR8749030	Uninduced	16.479
SRR8749031	Uninduced	12.114
SRR8749032	Uninduced	13.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.055
SRR8400027	Control - Root	51.240