Gene detail

Gene detail information of Glyur000557s00018790.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23310.1	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
NR	XP_003535423.1	0	PREDICTED: serine/threonine-protein kinase 38-like isoform X1 [Glycine max]
COG	YP_001511011.1	6.00E-24	WD-40 repeat-containing serine/threonin protein kinase [Frankia sp. EAN1pec]
Swissprot	tr\|Q9LE81\|IRE_ARATH	5.00E-79	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|K7LK50\|K7LK50_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G32480.3}

Sequence

Transcript Sequence

>Glyur000557s00018790.1
GAGTGAGGGAAAATCACAAAAGATTCATGAACATTAAATATGTTAAAAATCAAAATAATAAATAAATTTTTTGACAAAAAATTTAGGGTTCGATCCCTAANAACACAAAGGTGAAAAAAATTTCTTAGAAAGAAAGAGTTAATTGGATTTGATGGCAACAAACAAAGAAAGAGTGAGGGAATTTATGAGTGAATNGCAAAAAGGGGAGATAGTGAAGTAGTTTCCTTTCCAAGTTTGTTCTCAAAAATAGAAAATAAAAGGGGTTTCCAACTCTGAACATCAAAAAAAAAATGAAAGGAAAGAGGGAGTGAACGAGNGAATGAATGGGACACGACACGAGAATGATGATCGCAAAGTGGTTCTCTCTCCTCCTCCTGCTTTCTTCACACCGATAATCTCGGCCCTTTAATTTCTCTCTCTAAATTCTCTCTCTTTCTCACTCCTTCCACTCCCACAACTTCTCTGATTCCTCTCAATTTGAGGTCTTTCTTCTCCAACACCCGTTTGCTCTTTCAATCCAAGTTTCAAGTTTGGTTAGCTTGTGCAAGTGTTGTTTGATTGGTTTTGATTTTGATTTCGAGAAGTAAGAGTTAACGTGCCTTCAATTCTTATGGTGAAAAATGGCTCCTTGATTTTCATTACTGGCAAAATGAGATTCTTGGTTGAGACAACTTCTAATATTTAGTGGTTGGTGAGCTAGACGATATAACGAGCAGGATTAAGAGCTTCGTAAAATGGATAGTTGCTGGTTTAGTAAGTTCAAATCAAAGGACAAAATGCTGTCTTCAAAAAACAAGGAAACTACAGGCATTGCAAAACAGGGGTCAAAACCCCCAACAAATGAAGAAGCTCCTTCAAATGTGACCAAACAGAAGGTTGCAGCTGCAAAGCAGTACATAGAAAACCATTATAAGAAGCAGATGAAGGACCTGCAGGAGAGAAAGGAACGACGGAATATACTAGAAAAAAAATTGGCTGTTGCTGAAGTCTCTGAGGAAGAACAAAACAACTTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTCAGAGGCATAAGATGGGGGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTCCGCCGAGGCCAGGTTGAACATGTGAAAGCCGAAAGGAACCTACTTGCAGAAGTTGACAGCAATTGCATTGTAAAGCTTTATTATTCCTTTCAAGATGAAGATTATTTATATCTCATAATGGAGTATCTACCTGGTGGTGATATGATGACATTGCTCATGCGGAAGGATATACTGATGGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCACAGAGATATCAAACCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTACTGGAATCAACAAGAGTGGAGCCCTTCAGAGCAATGGACATCCTGTGGCTCCCAGAAGGACTCAGCAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTTGGAACACCTGACTATATTGCCCCTGAAGTTCTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTTTGGGAGCTATAATGTATGAAATGCTAGTGGGATATCCACCNTTTTATTCTGATGAACCGATGTTGACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCTAAACTATCAGCAGAGGCAAAAGATCTCATTTGTAGACTGCTATGTAATGTGGAACAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGATAAGTTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTNGATACTCAAAATTTTGAGAAGTTTGAAGAGGTGGACGACCAAACTCAAACTTCGTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTTAACTTCGTTGGCTACACATATAAGAACTTTGAAATCGTGAATGATGATCAACTACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAACGGCCATCTATTAAGACCCTATTTGANGATGAATCGGCGGCGCCTGCTAATCAAGCTGTCCAAGGGAGCTTCTTAAAACGCTTACCTCCTCAACCAGAAGTTCCTGAGAAGAGTGAGGANTAATGGCAATGATATAAAGCAATAATAATATTTGACAGGAGTTTTAGATGGACAACCAAAAAAATGCCAGGTTGAATACTGATTGTTTTACTCTTTCCTACATTNTTTTGTTAGTTTGGCGTGAATAGTTATTATGGGAAGATTGGTTTTTGGGTTGACTGGGGTGTAGAAAAGTCTTAAGGTATATAATCTATATTTCTTTACATTTTTGGTTGGTGGTGTATTCTTTTGTTCACCATTTATCAAGCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00557	83245	90002	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000557s00018790.1	PF00069.20	Pkinase	122	409	2.70E-57
Glyur000557s00018790.1	PF00433.19	Pkinase_C	428	475	0.00015

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.512
SRR1783600	control	16.519
SRR1783602	moderate drought stress	13.218
SRR1811619	moderate drought stress	13.036

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.628
DRR006520	Root Summer glycyrrhizin high producing strain	18.401
DRR006521	Root Winter glycyrrhizin high producing strain	10.172
DRR006522	Root Winter glycyrrhizin high producing strain	9.822
DRR006523	Root Summer glycyrrhizin low producing strain	20.252
DRR006524	Root Summer glycyrrhizin low producing strain	20.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.791
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.830

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.592
SRR2868004	Drought Stress (root)	39.288
SRR2967015	Control (root)	34.380

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.561
SRR9715740	Leaf	25.673
SRR9715741	Leaf	27.329
SRR9715739	Root	2.766
SRR9715742	Root	13.435
SRR9715743	Root	12.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.124
SRR8749028	MeJA induced 9h	26.283
SRR8749029	MeJA induced 9h	14.351
SRR8749030	Uninduced	17.874
SRR8749031	Uninduced	13.375
SRR8749032	Uninduced	8.742

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.438
SRR8400027	Control - Root	33.475