Gene detail

Gene detail information of Glyur000557s00018789

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	KHN30575.1	Putative methyltransferase PMT8 [Glycine soja]
Swissprot	tr\|Q940J9\|PMT8_ARATH	Probable methyltransferase PMT8
trEMBL	tr\|K7LK48\|K7LK48_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G32471.2}

Sequence

Transcript Sequence

>Glyur000557s00018789.1
CGTNACCTGATTTTCAACTTGTGGCATAAAATAAAGCACCGACTGGGAGNAGAGTTGGAAAACGCTGTGCCGTGTGCAATGGCATGATGATGATGATTGTCAAGCGTTAAGTGCAAACCCACTTTGTCCAAATGGAATCGCGATGGTAACACTAACACCCACATCATTTTCTTTCTCAATTACTATATATATTATAATACTATGCCGTGAAAGTTGTCACCTTAGTCACAGGTCAATTTGCTGTCGGCACTAGTTGCAACTGTTCCTAANACTTTTAGGCCGGGACACACCACCTTAAAAATTCACCTCCACTTTCACACACATACACACACTATAACAACAAAAACATCCTAACACTCACTGAGATCTCATTTCCCTCTTGGTTTTCTTCTTCTTTATTTCTATATATCTTCATATAGCTTTTTTCTCCCCCTTTGAGACGAAGCTGGGTTTTTTGTTTCCTCTTCTCACACCCAATTGGATTTTGATCTGAACCCAGTTAATCATTAAGTCAGTGTATTGTGAGGAAGCTGTATTATGAATATACGATTCTGATTTGAATTATTGGGGTTGCTACGTTCAGTGGGGTTTTGGATGGTGGATTTCACTCTGAATGTCTGGTGAAACGAGATATTTTTAGTTCATAACTGAACAGTGAAAGTTGCAATTTGGATTTGTATTACTTTCAACTAATAAATGTCGAGGGGAAGATCTGATGGATCACAAAAGAAGCGCTTAGTTGCTTCCATCTGTGTTGTTGCTGTTTTTCTTGGTTTTCTGTATGTATACGGTGGATCCATCTTTGGTTCTCAAAATAGTGGTTCATCTGCTCTCGAATATGGCAGCAAATCATTGAAAAGACTTGGGTCATCATATTTGGGTGCNGATGATAGCAATGATGGCAAGCAAGATGAATCTTCATTGAGTTTAGGGCAGAGAGATGGGGAGGACGATGTTGTTCCAAAGAGTTTCCCTGTTTGNGATGACCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTATCTATCAAATGCGGATGAAACTGGATTTGTCTGTGATGGAACACTATGAGAGACATTGTCCTCCTGCAGAAAGGCGGTATAATTGCTTGATTCCTCCTCCATCAGGATACAAGGTCCCTATTAAGTGGCCACAAAGCAGAGATGAGGTGTGGAAAGCAAATATCCCACATACTCACCTTGCACATGAGAAGTCTGACCAGAATTGGATGGTTGTAAAAGGTGAAAAGATAGTGTTTCCTGGAGGCGGGACTCATTTTCACTATGGAGCTGATAAGTACATTGCAGCAATGGCAAATTGCTGGTTGATTGATATATTCTGTTTATCTGGATTTGCTTGCATTTCATGGATAAATCATTTTCTTAACAACCCAGTTGCAACTTTGCATTGTCAGATGCTTAACTTTTCGAACGATAATCTAAATAATGAAGGAAGATTGCGGACAGTGCTTGATGTTGGCTGTGGTGTTGCAAGTTTTGGAGCATATCTTCTTTCATCTGATATCATTACAATGTCCTTGGCACCAAATGATGTGCATCAAAATCAAATTCAATTTGCCCTAGAAAGAGGAATTCCTGCATATCTTGGTGTCTTGGGAACTAAGAGACTCCCTTACCCAAGCAGATCTTTTGAACTTGCTCATTGTTCTCGTTGTCGAATTGATTGGCTTCAGAGAGATGGAATACTACTACTTGAATTAGACCGGTTGCTCAGGCCAGGAGGTTATTTTGCATACTCATCTCCAGAAGCATATGCTCAGGATGAAGAGGATCTAAGGATATGGAGAGAAATGAGTGATCTTGTGGGGCGTATGTGTTGGAAAGTAGCTGCAAAAAGGAACCAAACCGTCATCTGGCAAAAGCCTCTGACAAATGACTGCTATATGGAAAGAGAACCCGGTACTCACCCTCCTCTTTGCCAGTCTGACAACGACCCAGATGCAGTTTGGGGAGTAAATATGGAAACTTGTATAACACCTTACAGTGATCATGACAACAGAGCTAAAGGAAGTGGCTTAGCTCCATGGCCTGCAAGATTGACCAGTCCTCCTCCTAGATTAGCTGACTTTGGCTATTCAAATGAAATGTTTGAAAAGGATACGGAATTATGGAAAAGGAGAGTTGATAAATACTGGAATCTCTTGAGTCCAAAAGTCACATCAAACACGTTGAGGAATATTATGGATATGAAAGCAGGCATGGGTTCATTTGCAGCTGCTCTTAGAGACAAGAATGTTTGGGTGATGAATGCTGTGCCTCAAGATGGACCAAACACACTTAAACTTATATATGACAGAGGCCTCATAGGCACTACTCATGACTGGTGTGAAGCATTTTCAACATACCCAAGGACTTATGATTTACTCCATGCATGGACCGTCTTCTCTGATGTGGCAAAGAAAGATTGCAGCGCGGAGGATCTATTGATCGAGATGGATCGCATGCTTAGGCCTACCGGTTTCATAATCATCCGGGACAAACAGCCGGTGATCGATTTTGTAAAGAAGTACCTTACTGCTTTGCACTGGGAAGCAATTGCAACTGCAAACTCTGAGCAGGATGGTGATGATGAAGTTGTTCTCATCATCCAGAAGAAATTGTGGCTGACTAGTGAAAGCTTCAGGGATACCAAATAGGACAACCATATTGAATTTTCATTTTCTTAATATATTATCTACTGCTGCTGCTGCAACAAGGGATATCAAAGCAGGTCCCAACTTCATTTTGTAGCGTTACAAATACATAATGCTTTCTTTTCATTCTATTTCCTTCTTTTGATTCTCATTTTTGGGATGATGATTCATGTTACTTAAGACATAGGCATCACGCTTTTATAGGGCCATTCAAAATTTTGCCTGCAGTTGGGTATTATGTAATGTAAGCTAGTTAATAATCAAGACATTGCAGACTTCATGATAAAAGTATAGACAAGGACTTGCCACTTATAATTTATGTAACATATACATATTCATGGATTTTCTGCTCTGAATTTCATTTGTAGTATAGTAGTATTTTTATGCTATTTTGTTCAGTATCGCTTCCTCAAGCTCAGAATAGGACCTGAAGTGAAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00557	76558	82433	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000557s00018789.1	PF03141.11	Methyltransf_29	101	210	1.20E-41
Glyur000557s00018789.1	PF03141.11	Methyltransf_29	243	641	5.30E-179

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.290
SRR1783600	control	49.311
SRR1783602	moderate drought stress	24.528
SRR1811619	moderate drought stress	24.189

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.436
DRR006520	Root Summer glycyrrhizin high producing strain	48.195
DRR006521	Root Winter glycyrrhizin high producing strain	126.634
DRR006522	Root Winter glycyrrhizin high producing strain	122.997
DRR006523	Root Summer glycyrrhizin low producing strain	56.672
DRR006524	Root Summer glycyrrhizin low producing strain	56.870
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.325
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.222

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	73.945
SRR2868004	Drought Stress (root)	54.584
SRR2967015	Control (root)	51.986

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.446
SRR9715740	Leaf	33.565
SRR9715741	Leaf	31.360
SRR9715739	Root	12.670
SRR9715742	Root	50.838
SRR9715743	Root	46.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	124.750
SRR8749028	MeJA induced 9h	113.435
SRR8749029	MeJA induced 9h	66.751
SRR8749030	Uninduced	47.877
SRR8749031	Uninduced	15.265
SRR8749032	Uninduced	19.791

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.541
SRR8400027	Control - Root	63.227