Gene detail information of Glyur000557s00018788 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31160.1 | 4.00E-60 | Protein of unknown function (DUF640) |
| NR | XP_003536217.1 | 6.50E-90 | PREDICTED: uncharacterized protein LOC100789834 isoformX2 [Glycine max] |
| Swissprot | tr|O82268|LSH3_ARATH | 3.00E-82 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 |
| trEMBL | tr|I1LC58|I1LC58_SOYBN | 3.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G32450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00557 | 71707 | 72330 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000557s00018788.1 | PF04852.7 | DUF640 | 43 | 168 | 2.40E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.808 |
| SRR1783600 | control | 17.943 |
| SRR1783602 | moderate drought stress | 27.713 |
| SRR1811619 | moderate drought stress | 27.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.992 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.534 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.095 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.773 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.119 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.445 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.165 |
| SRR2868004 | Drought Stress (root) | 0.623 |
| SRR2967015 | Control (root) | 0.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.052 |
| SRR9715739 | Root | 7.803 |
| SRR9715742 | Root | 3.718 |
| SRR9715743 | Root | 5.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.228 |
| SRR8749028 | MeJA induced 9h | 0.108 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.596 |
| SRR8400027 | Control - Root | 0.824 |