Gene detail

Gene detail information of Glyur000557s00018785

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G65660.1	Pre-mRNA splicing Prp18-interacting factor
NR	XP_008785246.1	PREDICTED: pre-mRNA-splicing factor SLU7 [Phoenix dactylifera]
Swissprot	tr\|Q9SHY8\|SLU7A_ARATH	Pre-mRNA-splicing factor SLU7-A
trEMBL	tr\|A0A0A0LFN9\|A0A0A0LFN9_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN60870.1}

Sequence

Transcript Sequence

>Glyur000557s00018785.1
TCCATAACGTTCGTCGTGTCTCAGTGCTCCTCGCATTCTCGCATTCCGTGATTACCAGACATGGCTACTGCATCAGCAACCTTCAAATCTAGGGAGGACCACAGAAAACAGCTTGAATTGGAGGAGGCGCGTAAAGCTGGCCTTGCACCGGCTGAGGTAGATGAAGATGGGAAAGAGATTAACCCTCATATCCCCCAGTATATGTCTTCTGCTCCGTGGTATTTGAATGCTGAGAAACCTAGTCTAAAACATCAAAGGAAATGGAAATCGGATCCAAATTATACAAAATCTTGGTATGACAGAGGTGCAAAAGTATTTCAGGCTGATAAGTATAGGAAGGGAGCATGTGAAAACTGTGGAGCAATGACACATAATGCAAAGTTATGCATGGAGAGGCCTCGAAAGATAGGAGCAAAATGGACCAACAAGCATATTGCTCCTGATGAGAAGATAGAAACATTTGAACTTGATTATGATGGCAAGCGAGATCGATGGAATGGTTATGATACAGCAACCTATGCTCGTGTCATTGAAAGATATGAGGCAAGAGATGAGGCTCGGAGGAAGTACTTAAAAGAACAGCAATTAAAAAAACTTATGGCNAAAAACAATAAACAAAATGGGGAAAATGAGTGTAGTGATGATGATGAAGATGAAGATGCTCTAAAGGTTGATGAAGCTAAGGTTGATGAGAGCAAACAGGTGGACTTTGCCAAGGTTGAGAAGCGTGTTAGAACTACAGGAGGTGGCAGTACAGGAACTGTAAGAAACTTGCGTATCCGTGAGGACATTGCGAAATACCTTTTGAATCTTGATGTCAATTCTGCTTACTATGATCCAAAAACCCGTTCCATGCGAGAGGATCCCCTTCCTGATGCTGATCCTAATGAGAAGTTTTATGGAGGAGACAACCAATATAGAATGAGTGGACAAGCTTTGGAGTTCAAGCAACTTAACATTCATGCTTGGGAAGCATTTGAGAAAGGCCAGGATATCCACATGCAAGCTGCACCTTCCCAAGCTGAATTACTTTATAAGAATTTCAAGATAATTAAAGAGAAGCTGAAATCACAAATGAAAGGTGCCATAATGGAGAAGTATGGAAATGCAGCAGCCCAAGAAGAGCTTCCGAAGGAGCTTCTTTTGGGACAAACCGAGAGACAAGTTGAATATGATCGCACTGGCAGAGTCATAAAAGGCCTGGAGGCATCTCTCCCCAAAAGCAAGTATGAAGAGGATGTATACATTAATAATCACACAAGCGTGTGGGGTTCATGGTGGAAGGATCACCAATGGGGCTACAAATGTTGCAAGCAAACAATAAAAAACAGTTACTGCACTGGGGCAGCAGGAATTGAAGCTACTGAGGCGGCAGCAGATTTAATGAAGGCAAACATTGATCATACTCCTACTCAGGCAGAGGAGAAAAGGCTTGCCTCTTGGGGAACTGATGTACCTGATGACCTGGACCTGGACCAGAAAAAACTTGCTGAGGCCCTTAAAAAGGAGGATGAAAGAAAGAGGGAGGAGAAAGATGAAAGGAAACGCAAGTATAACGTTAGATGGAATGATGAGGTCACTCCTGAGGAGATGGAGGCATATCGTATGAAAAAGATTCATCATGATGATCCCATGAAAGATTTTCTGCATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00557	54683	59415	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000557s00018785.1	PF11708.3	Slu7	135	405	3.00E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.205
SRR1783600	control	3.282
SRR1783602	moderate drought stress	11.976
SRR1811619	moderate drought stress	11.809

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.763
DRR006520	Root Summer glycyrrhizin high producing strain	10.638
DRR006521	Root Winter glycyrrhizin high producing strain	13.484
DRR006522	Root Winter glycyrrhizin high producing strain	13.389
DRR006523	Root Summer glycyrrhizin low producing strain	8.380
DRR006524	Root Summer glycyrrhizin low producing strain	8.445
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.782
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.783

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.367
SRR2868004	Drought Stress (root)	16.523
SRR2967015	Control (root)	12.060

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.053
SRR9715740	Leaf	9.857
SRR9715741	Leaf	10.855
SRR9715739	Root	0.096
SRR9715742	Root	3.037
SRR9715743	Root	2.764

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.470
SRR8749028	MeJA induced 9h	27.402
SRR8749029	MeJA induced 9h	16.587
SRR8749030	Uninduced	15.719
SRR8749031	Uninduced	15.057
SRR8749032	Uninduced	16.251

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.052
SRR8400027	Control - Root	21.351