Gene detail

Gene detail information of Glyur000557s00018779

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04400.2	0	cryptochrome 2
NR	XP_004495383.1	0	PREDICTED: cryptochrome-2-like isoform X2 [Cicer arietinum]
COG	YP_004652658.1	2.00E-128	hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
Swissprot	tr\|Q56ZL8\|CRY2_ARATH	0	Cryptochrome-2
trEMBL	tr\|Q6EAM9\|Q6EAM9_PEA	0	Cryptochrome 2A apoprotein {ECO:0000313\|EMBL:AAS79666.1}

Sequence

Transcript Sequence

>Glyur000557s00018779.1
AAACCATCAATGTAATCATCATACCCCAGGGAAAAATAAATATGTAGTTAAAGCACTCATTGTTATCTTTCCGACAGAGTTACAGTTACATCGTACAAGTGCNGTTGTTAATGGTATCGGGTAATGGTGAAATTTCGTCCATATTCATGAAATCGTGGAAGCTGCTGGTAGNCCCTAGTAGTAGTGACATGTTCCATGTTCTTATCCTTTTGTCTCTGTTCAATCATATGTGTCTGTCACCCACTATCCTCAGTGCACTCCTCTCATATGATGTGATCTCCTCCACGTGATGTATCATACACTAATCAGATCCTCACAACTCTCCCCAACACACTTNATTCACTTTTACACTGCATGCTTGCTATTAGCTACACCTTTCAATTTGATAAGATTTGGGGCTTTCTTGTCTCATTCATCTTCAGCCAAACTTTGATGGGGTTGTAATTCTGAATACTAAATATCTCTCTGATGGGGTATTATTTGGCATCTTTATAATTAGCTCGAGTTTGAAGTTGGTTTGAGNCTGGAGTTTGAAGAACTTTGCAGTTTACTCATCTCTTTTATCTTCAAGGATTTATTTTATTATAGTATAATTTGACATATTCCATCCAGCTCTAGTTGTTTGTGGATAATGTTCTTTATCATTTATGATTGTGCAACCTTTATTATTGTTCTTTAGGCACTTTTGTTTCTTTCCATATATTTNTTTTTTGGGTATTTTTAACCGGTGGCCTTCAAATTGGTGAGAGGGACATGTGGGGAAGGATTCCCTGAGTTGGTTTTAGGTTGGATACCTTCCAGAAAGCAAAGTGGCATGCAAGTTGGATATCCTGATAAGCTACCTACCTGTTAGGTCTACTTTTGGCAGTGATTTGAGGCTATTATCCTGTGCTGCTGTAGATATCTTTTTACTCTTGAAACAAAATTTCAGATCCAACCTTTTGTAGCCAATTTTTGTGCTATATCAATCTTCATCATTCTTCAGATATTTTCTGTTGGTAATTGGGATCTTGAATAGGAAAACCATGAACTTTGGAGGTGAACTCTCTGATATTATGTTGGGTATATGAGGTTCAGAGCTTTGGCTGTGGCATGAAAAATCTGAAGCATGCAAAATATGGGTAGCAACAGAACCATTGTTTGGTTCAGAAGGGACCTTAGAATTGAGGACAATCATGCATTAGCTGCAGCTGCAAGGGAAGGTTCTGTGTTCCCTGTGTATATATGGTGCCCTAAAGAGGAAGGACAATTTTATCCAGGAAGAGTGTCAAGATGGTGGCTGAAGCAGTCTCTTGCTCACTTGGATCAGTCTCTGAAATCTCTTGGAGCTGGACTTGTGCTGATCAAAACTCACAGTACTCTCACAGCACTTTTGGAGTGTATAAATGCTATTCAAGCCACAAAAGTAGTGTTTAACCATCTCTATGATCCTGTTTCACTTGTTCGCGATCACAACATCAAAGAAAAACTAGTGGAACATGGCATATCTGTGCAAAGCTACAATGGGGATCTGTTGTATGAGCCGTGGGAAGTATACGACGAGAAGGGGCATGCTTTTACAACCTTTGATCCCTTTTGGCAGAGATGCTTGCACATGCAAATGGAACCTGTTTCACTTATTCCTCCATGGCAATTAATTCCAGCTGAAGGAAAAGTTGAGAACTGTTCAATAGAGGAACTAGGTCTTGAAAATGAAGCAGAAAAACCCAGCAACGCATTACTAGGACGAGCATGGTCTCCAGGTTGGAGCAATGCTGACAAGGCTTTAACAGAATTTGTGGAGCAGCACCTCCTTCACTACTCCAAGAATAGGCTTAAGGTTGGTGGAGACTCCACCTCGCTTTTGTCCCCATATCTCCATTTTGGAGAATTGAGTGTCAGGAAGGTTTTCCAATCGGCACGCGTGAAGCAGATACTATGGACAAATGAAGGCAACAGTGTTGGTGAAGAGAGTGTGACTCTTTTCCTCAAAGCCATTGGACTGAGAGAGTACTCACGCTATCTTTGTTTCAACTTTCCATTCACTCATGAGAGAGCACTCCTTGAGAACTTGAGGTTTTTCCCTTGGAATGCTGATCCTGGTAACTTTAAGACTTGGAGACAAGGTAGGACTGGCTATCCTTTAGTTGATGCAGGAATGAGGGAACTTTGGGCAACAGGGTGGATACACAACAGAATAAGGGTAATCGTTTCCAGTTTTGCTGTGAAAATGTTGCTCCTACCCTGGAAATGGGGGATGAAGTATTTCTGGGACACACTTCTGGATGCAGACCTTGAAAGTGATATCTTGGGCTGGCAGTATATCTCAGGATGCTTACCAGATGGTCACGAGCTCGAGCGCTTGGACGATCCTGAGATTCAAGGGTCTAAATTTGATCCAGAAGGTGAATACGTAAGGCAGTGGCTACCTGAGTTGGCAAGAATGCCAACCGAGTGGATCCATCATCCTTGGGATGCACCTCTTAGTGTGCTTAGAGCAGCAGGAGTTGAGCTGGGTCAGAATTATCCAAACCCAATAATTGAAATAGATTTGGCCAGGGAAAGACTGACCCAAGCCATATTCAAGATGTGGGAAACTGAGGCAGCAGCAAAAGCTGGTGGTAGCTCTGAAGCAAGGGATGAAGTGGTTGTTGATAACTCCGACAGTGTTGAAAATAATGTAGACATTCCAAAAGCAGTTGTCTCTAAGGGAAAGAATCCATGTTCTGCTGCTATTTCAGCTAATGATCAGAAGGTTCCAGCACTTCAGGCTCAAGATCCCAAGAACGACCCACATATTAGGAAGAGATCAAAATCAAAATGTATGGCAGAGAAGGGACAGAAGCAGGGTAATTCAGAAAACCATGAGAAAGATACTAGGGTGTCGAGCGTTGACCAAGACACGTGCTCCACAGCTGACTCTTCTTCATGCAAGAAGCAGTGTAATTCTACAAGCACCTACTCATTTTCTGTTCCACAACAGTGGGCGACGTGAGGTTAATGTTGTCCAGTAGCAGCTGGATTACTGACGGAAATAAAATCATGCCATAAATTAAGCCTATGCTGTTCTCTGTGGCTATACATATAAGTTGTGCAAAAGGTATTGAAATCCAAGAAAAGAACACAGGATGGATTGAAACAATAGGCAACATTGTATATTATTTACTTGTGCTCAATCTTGTATTGTATAATACTAACTCGCCAAACGAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00557	18741	24344	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function
GO:0003913 DNA photolyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000557s00018779.1	PF00875.13	DNA_photolyase	9	167	1.80E-43
Glyur000557s00018779.1	PF03441.9	FAD_binding_7	211	484	4.40E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.824
SRR1783600	control	50.169
SRR1783602	moderate drought stress	75.788
SRR1811619	moderate drought stress	75.361

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	105.336
DRR006520	Root Summer glycyrrhizin high producing strain	104.698
DRR006521	Root Winter glycyrrhizin high producing strain	131.202
DRR006522	Root Winter glycyrrhizin high producing strain	129.011
DRR006523	Root Summer glycyrrhizin low producing strain	90.674
DRR006524	Root Summer glycyrrhizin low producing strain	90.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.255
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.237

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.323
SRR2868004	Drought Stress (root)	38.759
SRR2967015	Control (root)	54.311

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.690
SRR9715740	Leaf	53.997
SRR9715741	Leaf	51.095
SRR9715739	Root	10.167
SRR9715742	Root	53.704
SRR9715743	Root	47.804

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.772
SRR8749028	MeJA induced 9h	23.615
SRR8749029	MeJA induced 9h	19.088
SRR8749030	Uninduced	5.627
SRR8749031	Uninduced	3.424
SRR8749032	Uninduced	6.736

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.284
SRR8400027	Control - Root	64.053