Gene detail

Gene detail information of Glyur000557s00018776

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03220.1	4.00E-107	Eukaryotic aspartyl protease family protein
NR	AFK42416.1	0	unknown [Lotus japonicus]
Swissprot	tr\|P13917\|7SB1_SOYBN	8.00E-75	Basic 7S globulin low kDa subunit (Precursor)
trEMBL	tr\|I3SQ74\|I3SQ74_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK42416.1}

Sequence

Transcript Sequence

>Glyur000557s00018776.1
ATGGTTGCCTCAGTTAGGTTCTCCATCTTCTTGTCCCTTCTCTCGTTGATCATCTCCTCCTCCATAGCCCAAACCTCTTTCAGACCAAAGGCACTCGTCCTTCCAGTCACCAAAGATGTCTCTTCCTCCACACCTCAATATGTTACCCAAATCAAACAGAGGACACCCCTTGTGCCAGTAAAGCTAACCCTTGATCTTGGTGGTGGCTACCTTTGGGTGAATTGCGAAGACAAAAGCTATGTCTCATCCACCTTAAAACCAATCCTTTGTGGCTCTGCTCAGTGTTCCCTTTTCGGGTCACACGGTTGTAGTGGTGACAAAATCTGTGGCCGGTCACCAAGCAACACAGTAACCGGTGTATCCACATACGGTGACATTCATTCAGATGTTGTCTCTGTCAATTCCACCAATGGAAACAACCCCACAAGGGTTGTTTCAGTTCCAAACTTCCTCTTCATTTGTGGGTCAAAGGTTGTCCAAGATGGCCTTCCTCGNGGTGTCAAAGGTATGGCTGGTCTTGGAAGGACAAGAGTCTCACTCCCTTCTCAGTTTGCATCAGCTTTCAGCTTCAAAAGAAAGTTCGCAATTTGCTTGGGCTCTTCCCCTTTAGCAAATGGTGTTATTTTCTTTGGTGATGGGCCTTATAATTTAAACATGGATGTCTCCAAGGTTCTAACTTTCACCCCTCTCATTACTAACCCTGTCAGCACTGCTCCTACTGCTTTCTTGGGGGAACCCTCAGTTGAGTACTTCATTGGGGTGAAGTCCATTAGAGTCTCCAACAAGAAGATACCACTGAATACAACACTGTTATCTATAGATAGATCAAATGGGGTTGGTGGGACTAAGATTAGCACTGTTAATCCTTACACTGTTATGGAGACATCAATCTACAAGGCTGTGGCTGAGGCATTTGTGAAAGCAGTTGGTGCCCCTACTGTTGCACCTGTGGCTCCATTTGGGACTTGTTTTGCAATCAAGGATGTTGGGTCTTCTAGAATGGGCCCTGNTGTGCCTTCTATTGATTTGGTGTTGCAGAATGAGGAAGTGGAGTGGAGCATCATTGGGGCAAATTCAATGGTTCGGGTTAATAATGGTGATGTGATTTGCTTGGGTTTTGTGGATGGTGGTGCTCACCCAATGACTTCAATCACAATTGGGGCACATCAATTGGAGAACAACTTGCTGCAATTTGATTTGGCTACCTCAAGGCTTGGGTTCCGATCTCTATTCTTGGAGCACACCAACTGTGACAACTTTAATTTTACCTCCTCTGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00557	12349	13629	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000557s00018776.1	PF14543.1	TAXi_N	47	212	4.20E-41
Glyur000557s00018776.1	PF14541.1	TAXi_C	249	408	3.50E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.090
SRR1783600	control	2.943
SRR1783602	moderate drought stress	9.172
SRR1811619	moderate drought stress	9.156

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.097
DRR006520	Root Summer glycyrrhizin high producing strain	2.962
DRR006521	Root Winter glycyrrhizin high producing strain	546.950
DRR006522	Root Winter glycyrrhizin high producing strain	530.404
DRR006523	Root Summer glycyrrhizin low producing strain	2.443
DRR006524	Root Summer glycyrrhizin low producing strain	2.505
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.787
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.948

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.314
SRR2868004	Drought Stress (root)	3.078
SRR2967015	Control (root)	1.942

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.696
SRR9715740	Leaf	1.039
SRR9715741	Leaf	5.070
SRR9715739	Root	12.847
SRR9715742	Root	26.389
SRR9715743	Root	22.043

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	230.490
SRR8749028	MeJA induced 9h	293.393
SRR8749029	MeJA induced 9h	332.614
SRR8749030	Uninduced	649.613
SRR8749031	Uninduced	1089.990
SRR8749032	Uninduced	1081.548

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.254
SRR8400027	Control - Root	0.801