Gene detail

Gene detail information of Glyur000556s00025899

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31920.1	7.00E-69	Plant protein of unknown function (DUF936)
NR	XP_004488583.1	0	PREDICTED: uncharacterized protein LOC101492701 [Cicer arietinum]
trEMBL	tr\|A2Q3C0\|A2Q3C0_MEDTR	0	Legume lectin, beta domain {ECO:0000313\|EMBL:ABN08120.1}

Sequence

Transcript Sequence

>Glyur000556s00025899.1
ATGGCGTCGCTGACCCCAGGAGTGCTATCGAAGCTTCTAGAAAACTCTGGAAACAGGGTAACCGGCGAGCACCGGCAGGCGCTGCTCCAGGTGACGGAGATCGTGCCGCGTCTGTCGGAGGACACGTGGCANCCAAGCGGAGGCTACTTCCTGAAGCTATCGGACTCACTCCACTCCGCCTACGCCTCCGTCTCCGACGCCGACGCCGAGTTGATCTGCGCCGACAAGCTCCGACTCGGCCAGTTCGTCTACGTGACTCGCCTCGACTCGGACAACGCTTCGCCAGTCCCACTCGTTCGTGGACTCAACCCTCTCCCCAAGAGGAGACCCTGCATTGGGAACCCCACTGACTTGGTATCCAGCGACTCCTTGCAACACGTTGTTACTTCAAAACCACACTTTAAGAAGAAGAACAACAACAACGTTTCTAGCGTGAAGAAGAAAGTGTCACCGTCTAAGGGGAACAACAACAACAACAACAACAACAACAACAACAACCCTGTGGCAGTGGAAATGAGGAGGTTGAGTTTGGATTCTACTAGAAGGGTTTGGGATCATACCCCTGTTGCTGCTAAATCTTCTCCTACTTCCAGATTCAAGTTGAAATCTACCTCCACTTCACCTAATGTGATGGACAAGAAGGTTTCTCTTAAAACTGATTCTCCACTGAAGTCTCCAACTTCAATTGTCTCACCACTGAAGAACAAAAACGAGAACTCGTGTCCAACTACAAAAACGACAACNACCCCTCCGAGGAAAAGTGTTACTAAGTTACCGTGTGTGGCTGGCACTGTTCCCACCCAACTCGTTAAGCAAGTTGTAACTCATAGGAATGTTGCTTTTCTGGCGGCTGTGCGGTCTCTTGAAGAAGCATCTGCTGCAGATACTGTGCTCCAATGCATGTGCTTGTTTGCTGAACTCTGTCAGTCTTGTCAGACACTTTCTGCTGGATTGCTTGTGAAGCAGTTTTTGGAGCTTCATCTGAGTTTGCAGAGAGTAAGAGTGGTATTTGATTCCTTACTTGCCACAGTTCCTGAAACAAAGCCAAGCAGCCACACTACCCTACAGTGTCNGGTGGAAGATGCATGTAAAGTCCCCACTCGCAAGAATGCCATATTTTGGGTACAAGCTGCCTTAGGTACCAATCTTTCCAAATTCAATCTATTCGGAACACAAGAAAAAATTGAGGGTGGGAATGGTGAGAAATGTCACTATGTTGTTATTGAGAATTCTTGCNAGGAAATGAATGCCGAAGAATACTCTGCTCAAAACAAGCAAACTCGTTTAACGCAAGCAAATTTCGTACCAAATTCAACCGGTAAAAGACTTTCTTCTTCAAAGCGGAATCTCTTGGTAGCTAAGAACAAGCATACGGAGAAGCAGAAGGATCAATCAAAAGAAAGCGAATTAAAAGTGGCTGCAAGTTTGGCAGAAAAACTGCTCGTTGCCTCTTGCGAATGGTTCCTGAAGTACTTGGAGGAATCTTTAGGTAATGAATTTGGGTTGAAAAATGAAGGGAGCACTGAAGTTGCATGTCTTCTTGGACAGCTCAAGAAGGTGAATCACTGGTTAGATAATTTGGTTGTTGGTGGAGAATCTGGAGATAAGGTTGATCATAGGGTAGAGAGCCTAAGGAAAAGTTTGTACCGGTTTCTACTTGAGCNTGTTAATTCTGCCGTTGCTTCTAGTTAGTATATATAGTGCTACAACAACTAACAGAATTGACAAAATGGAGCATATTATTCTCAACTGACTCTGCTATTGGACAGCTGACAGTGGTATTACAGTCAATACTTAAAACAGCTAGTGTTGGTTTTTGGTATAACCACTTAGGAGTTAGGATCTCACACCTTGTATACTATAATCTAACATGTATATGTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00556	46610	50843	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000556s00025899.1	PF06075.7	DUF936	4	253	1.20E-55
Glyur000556s00025899.1	PF06075.7	DUF936	182	562	3.30E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.078
SRR1783600	control	0.104
SRR1783602	moderate drought stress	0.387
SRR1811619	moderate drought stress	0.446

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.935
DRR006520	Root Summer glycyrrhizin high producing strain	1.666
DRR006521	Root Winter glycyrrhizin high producing strain	2.832
DRR006522	Root Winter glycyrrhizin high producing strain	2.637
DRR006523	Root Summer glycyrrhizin low producing strain	4.188
DRR006524	Root Summer glycyrrhizin low producing strain	4.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.466
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.583

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.956
SRR2868004	Drought Stress (root)	4.483
SRR2967015	Control (root)	8.060

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.123
SRR9715740	Leaf	1.288
SRR9715741	Leaf	0.665
SRR9715739	Root	0.251
SRR9715742	Root	1.318
SRR9715743	Root	0.603

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.979
SRR8749028	MeJA induced 9h	0.801
SRR8749029	MeJA induced 9h	0.556
SRR8749030	Uninduced	0.344
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.240

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.622
SRR8400027	Control - Root	2.293