Gene detail information of Glyur000556s00025895 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44280.2 | 4.00E-166 | Major facilitator superfamily protein |
| NR | XP_003531460.1 | 0 | PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Glycine max] |
| COG | YP_007778481.1 | 3.00E-07 | sugar (Glycoside-Pentoside-Hexuronide) transporter [Roseburia intestinalis XB6B4] |
| trEMBL | tr|I1KTR2|I1KTR2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G16870.6} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00556 | 22254 | 28925 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000556s00025895.1 | PF13347.1 | MFS_2 | 26 | 398 | 3.80E-37 |
| Glyur000556s00025895.2 | PF13347.1 | MFS_2 | 1 | 250 | 3.70E-16 |
| Glyur000556s00025895.3 | PF13347.1 | MFS_2 | 26 | 136 | 2.40E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.591 |
| SRR1783600 | control | 1.589 |
| SRR1783602 | moderate drought stress | 1.679 |
| SRR1811619 | moderate drought stress | 1.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.231 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.131 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.686 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.322 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.648 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.563 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 67.736 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 66.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.922 |
| SRR2868004 | Drought Stress (root) | 20.862 |
| SRR2967015 | Control (root) | 20.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.351 |
| SRR9715740 | Leaf | 47.414 |
| SRR9715741 | Leaf | 48.188 |
| SRR9715739 | Root | 1.329 |
| SRR9715742 | Root | 1.365 |
| SRR9715743 | Root | 1.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.582 |
| SRR8749028 | MeJA induced 9h | 7.499 |
| SRR8749029 | MeJA induced 9h | 2.239 |
| SRR8749030 | Uninduced | 11.308 |
| SRR8749031 | Uninduced | 14.793 |
| SRR8749032 | Uninduced | 5.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.327 |
| SRR8400027 | Control - Root | 7.104 |