Gene detail

Gene detail information of Glyur000555s00023350

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G02680.1	ETO1-like 1
NR	XP_006604459.1	PREDICTED: ETO1-like protein 1-like isoform X2 [Glycine max]
Swissprot	tr\|Q9ZQX6\|ETOL1_ARATH	ETO1-like protein 1
trEMBL	tr\|I1N9K4\|I1N9K4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G34200.1}

Sequence

Transcript Sequence

>Glyur000555s00023350.1
CTTTGAGTACCTCTATGCGATTCAATCCACAGCTGAACTCACTCTATTTCCAAGGTTCTCCTGTGTCCACTATCTTAATTGATTTGGGAAAGGGAGGGAACAAGTGTTGTTGCTTATCTGGGGTTGGAAATTACTCAGATGGGGGCAATGGAATGTGCCCCCTAATTCGTAANGTTTTGAATTTGAAGAGGAAGGGTGTAGAGTGCTATTGTGAAGATCTGGAACTTGTTTTCGTCTCTTATGCCCCATGAGGACTTTCTTCCCTGCTGAATCCTGTAAAGAAGTTCACTCAAATGCTTTGAATCCTCAGTCTTGGCTCCACATTGAAAGAGGGAAACTTCCCAAGTTGTCATCACACAACTCCTCTGCATCAATAGATTCTCTAATCAAGGTCCCACAGCCACCTATACTCCCGCTCTTTAAACCTATTGATTATGTGGAGGTTTTAGCTCAAATCCATGAAGAACTCGAGTCTTGTCCTCCACAAGAGCGATCAAATCTGTTTTTGTTACAGTACCAGGTCTTTCGGGGCCTTGGGGAAATTAAATTGATGTGTAGAAGCCTCAAGGCAGCGTGGCAGAAAGCTAACACTGTTCATGAGAAGATTATATTTGGGGCATGGTTGAAATATGAGAAGCAAGGGGAAGGGCCGATAGTGGACTTGCTTATGACTTGTGGTAAATGCGCAGAGGAGTTTCGGCCCATAGATGTAGCATCTCATCTTCNGTTTGAGATAAATGCAAGCTCCCAGGAGAGAATGACCACCAACGAGAGTCATGTTTCACAATATGTTACTTTTAAAATTGGAAATGAAAAGATAACTTGTGATAGACAAAAGATTTCTGAACTTTCGGCACCGTTTCACGCAATGCTAAAGGGGTATTTCAGTGAANCACTTTCTGAGACTATAGACTTGTCTGAAAATAATATCTGTCCTTCAGCTATGAAGGCAATACATTATTTCAGTTTGACCGGCAGTTTAGTCGAGGTCCCTCCAAATCTTTTGTTGGAGATATTGGTTTTTGCAAACAAATATTGTTGTGAAAGACTTAAAGATGCCTGCGATAGAAGACTTGCATCCTTAGTTTCCTCCAAAGAAGATGCTGTGGAGCTCATGGGATATGCTCTTNATGAGAATTCAGCTGTCCTTGCTGCATCTTGTTTACAAGTCATTTTACGTGATCTTCCAAACTGTTTGAATGACAATCGGGTGGTGGAGATATTTATTCATGCTAATAGACAGCAGCTGGCAGTCATGGCTGGGCCAGGTTCATTCGCACTTTTCTGTTTCTTAAGCGAAGTTTNGATGAACCTTGATTCTAGTTCAGAGACAACAGCTCATATCGTGGAATGCTTAGTTGATTTTGCTGAGAATGACAAGCAGAGGCTGCTGGCTTTACACCAATTGGGATGTGTAAGACTCTTAAGGAAAGAATACGACGAAGCACGTTTTCTTTTTGAGGGGGCTATGAATGCAGGGCANGTTTATTCCATTGCAGGTTTAGCTAGACTGGACCATATAAAGGGTGAGAACCATTTATCTCATGAGAAGCTTAGCTCAGTCATTTCTTCTGTTACTCCACTTGGATGGATGTATCAAGAAAGATCACTATATAGTGATGGTGATATGAGGTGGGAGGACCTCAAGAAAGCAAGTGATCTGGACCCTACTCTTATATATCCTTACTTGTATAGGGCTGCCTCTTTAATGAGGACACAGAATGCTCAAGCTGCACTGGAAGAAATCAATAGGATTCTTGGGTTCAAACTTTCATTGGAATGCTTGGAAATACGTTTTTTCATCTATCTGTCTCTTGAGGACTACAAAGCAGCTCTATGTGATATTCAAACAATTCTTACTCTACGTTCAGATTATAGAATGTTTGAGGAGCGTGTTGCTGCATCCCAACTCTGTACTCTTGTGCGTGAGCATGTTGAACACTGGACAATGGCAGATTGTTGGGCACGATTATATGACTGTTGGTCTGCAGTTGACGATATCGGGTCTCTATCTGTTATATACCAGATGCTTGAATCTGATGCAGCAAAAGGACTCTATAAATCTGACAAAATTATTTCATTTAGGCTGAGCTGTCCTGAGGCTGCTATGCGGAGTTTACAGTTAGCTCGGCAACATGCATCTAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTGTATGATACAGGTCATTATGAGCAAGGGCTCCGGAAAGCTGAAGAGTCTATTAGTATCAAAAGATCTTTTGAGGCCTTCTTCTTGAAGGCCTATGCATTGGCTGACTCTATTCTAGATTCATCATGTTCTTCAACTGTTATTTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCAGATAATCTGCGCAAAGGTCAGGCACTAAACAATCTTGGGAGTGTTTATGTTGACTGTGGGAAACTGGATTTGGCTGCTGATTGCTATATCAATGCCCTTAAAATCCGACACACCCGAGCCCATCAGGGTCTTGCTCGTGTTCATTGTTTCAAAAATGGTAAGGCTGCCGCATATACAGAAATGACTAAACTTATTGAGAAGGCAAAAAACAATGCATCTGCTTATGAGAAGAGGTCTGAGTTCTGTAATCGTGACCAAGCAAAGGCAGATCTGGAGATGGTGACTAGATTAGATCCACTTCGGGTGTATCCTTATAGATATCGTGCTGCAGTATTGATGGACAATCATAAGGAAGAGGAGGCCATTGCTGAACTATCCAGGGCTATTGCATTCAAAGCTGATTTGCACCTCTTACATCTCCGTGCAGCATTCCATGAACACAAAGGGGATGTCATAGGTGCTCTAAGGGACTGTCGTGCTGCACTTTCGGTGGANCCAAATCACCAAGANATGTTGGAACTTCACAGTCGTGTTAATACCCACGAGCCATGAGTCAAGAGCAACNTGGGAGATATGGAGCTGCTGCACATTGAAAACTTGTATTATAAGCTTGGCTGTATGCAAAGTTACACAGCACAGCCACACCATGAAAAATGGAGTGACCGCTATTTTTGCTGCCATCAGCTAAGTCATGAAAATCATNTTTGTAAAAGNGTTAAATATGTTTTTAACCCCTATGAATAAGTCAATATTCATTTTTAGTCTNTNATTTTTAAAACAATTTTTTTGGTTTCCCATTTTTNATAATAGATCACTTGTAGTCCCTCATAGTATATTTGTTCNGTCAAACTGATGACGTGTTAAACNGAATGACAACTCAAGTTTGACCATGTTAATCTAAATTATAGGTTATGCGGTCAAAATTTTTTAACTTACCCACTTATACCTCAANGAAGTTNGTTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00555	127620	133365	+

Gene family

Gene family	subfamily
Ubiquitin Family	BTB
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000555s00023350.1	PF00515.23	TPR_1	710	740	4.60E-05
Glyur000555s00023350.2	PF00515.23	TPR_1	710	740	4.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.429
SRR1783600	control	7.439
SRR1783602	moderate drought stress	10.311
SRR1811619	moderate drought stress	10.163

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.842
DRR006520	Root Summer glycyrrhizin high producing strain	12.728
DRR006521	Root Winter glycyrrhizin high producing strain	9.744
DRR006522	Root Winter glycyrrhizin high producing strain	9.341
DRR006523	Root Summer glycyrrhizin low producing strain	11.991
DRR006524	Root Summer glycyrrhizin low producing strain	11.874
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.945
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.867
SRR2868004	Drought Stress (root)	15.339
SRR2967015	Control (root)	18.253

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.965
SRR9715740	Leaf	6.872
SRR9715741	Leaf	7.043
SRR9715739	Root	5.574
SRR9715742	Root	12.116
SRR9715743	Root	11.810

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.219
SRR8749028	MeJA induced 9h	3.618
SRR8749029	MeJA induced 9h	1.804
SRR8749030	Uninduced	1.436
SRR8749031	Uninduced	0.872
SRR8749032	Uninduced	0.930

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.185
SRR8400027	Control - Root	14.779