Gene detail information of Glyur000555s00023346 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63300.1 | 1.00E-63 | FORKED 1 |
| NR | XP_007162463.1 | 6.32E-163 | hypothetical protein PHAVU_001G154400g [Phaseolus vulgaris] |
| trEMBL | tr|V7CW96|V7CW96_PHAVU | 2.00E-163 | Uncharacterized protein {ECO:0000313|EMBL:ESW34457.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00555 | 111763 | 117115 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000555s00023346.1 | PF05703.6 | Auxin_canalis | 37 | 293 | 2.80E-66 |
| Glyur000555s00023346.1 | PF05703.6 | Auxin_canalis | 339 | 467 | 9.80E-53 |
| Glyur000555s00023346.1 | PF08458.5 | PH_2 | 502 | 602 | 1.10E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.083 |
| SRR1783600 | control | 1.094 |
| SRR1783602 | moderate drought stress | 2.527 |
| SRR1811619 | moderate drought stress | 2.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.241 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.157 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.258 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.416 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.275 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.379 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.094 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.344 |
| SRR2868004 | Drought Stress (root) | 1.135 |
| SRR2967015 | Control (root) | 1.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.942 |
| SRR9715740 | Leaf | 0.063 |
| SRR9715741 | Leaf | 0.308 |
| SRR9715739 | Root | 0.559 |
| SRR9715742 | Root | 1.047 |
| SRR9715743 | Root | 1.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.658 |
| SRR8749028 | MeJA induced 9h | 17.078 |
| SRR8749029 | MeJA induced 9h | 15.086 |
| SRR8749030 | Uninduced | 1.431 |
| SRR8749031 | Uninduced | 0.911 |
| SRR8749032 | Uninduced | 1.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.109 |
| SRR8400027 | Control - Root | 1.976 |