Gene detail

Gene detail information of Glyur000555s00023345

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63280.2	0	NIMA-related kinase 4
NR	KEH23812.1	0	Serine/Threonine-kinase Nek4 [Medicago truncatula]
COG	YP_006527485.1	1.00E-27	serine/threonine protein kinase with PASTA sensor(s) [Melioribacter roseus P3M-2]
Swissprot	tr\|Q2QMH1\|NEK2_ORYSJ	0	Serine/threonine-protein kinase Nek2
trEMBL	tr\|A0A072U282\|A0A072U282_MEDTR	0	Serine/Threonine-kinase Nek4 {ECO:0000313\|EMBL:KEH23812.1}

Sequence

Transcript Sequence

>Glyur000555s00023345.1
ATGCAGCAATTCCGCATTATCACATATCGTATCATATATTACATCATACATAAACTAATGGTTCTTCTATTATTTACTGGGGGCTGCNCACTTCTCAAATTTGTCTGCAACTTTGGCAAATCGTGTCTATCTCACGAATTCAGGAATGTCTTTCTGTCAGTGATAGTAGGAGGTGAAGTGGTTTTAGTTCAAATGGAGCAGTATGAGATTCTAGAACAGATAGGCAAAGGTGCATTTGGTTCTGCTCTACTTGTCAGGCACAAGCACGAAAAGAAAAAGTATGTCCTCAAGAAGATCCGTCTTGCTCGCCAAACTGACAGAACCCGTAGGTCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATTATCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTGTAAAAAAGGCTAATGGTGTTCACTTTCCTGAAGAGAAACTCTGTAAGTGGCTTGTCCAGTTGCTGATGGCACTTGATTACTTACATGTAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGAACAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAATCGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTCGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTAGGATGCTGTATTTACGAAATGGCCGCTCACAGGCCAGCTTTTAAAGCTTTTGACATACAAGCATTGATTAACAAAATAAACAAATCTATAGTAGCTCCTCTGCCAACTATGTATTCTGGTGCTTTCCGAGGACTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTAAGGCCAACTGCGACGGAGTTACTGAATCATCCACATCTTCAGCCATACGTTCTTNAAATTCACCTAAAATTAAATAGCCCCAGAAATAGTACTTTCCCATTCCAATGGCCTGAGTCAAACTATGTAAGGAGAACTCGCTTTGTGGAGCCAGAATCTGTTTCCACTCTCTGTGACCAAGATAAATGCTTGTCATTAAGCAATCACAGGGCCTTGAATCCTAGTATTTCTGGAACCGAACAAGGTTCTCAGTTTTCTACTCAAAGAGCTCATGAATTATCCACTTGTTCAAACGAGAAGCTCTATGAATTATCTGTTGGTGGTGTCTGTGATCAATGCAATACTAACAAATCAAAAGCCATAAAGTCCTCAACTGTTGAGAGAAGACCAAGACCTAGAGCAGATAAAGATTCTGCTGCTGCCAGAAGGCAGACAATGGCACCATCAAAGATATCCCATACTAGTTCAAAGCGTGAATCACTTCCAGCGTCTCGTGCACCATCTGGTAAGTTTACCACACCAACTCGAAGAGCATCTCTTCCGCTTCCTACAAGAGTCAGGACCACAGCAAACTTTTACACCAATGTTGGTTGTGTGGATTCTCCTGATGTTTCCGTTAATGCACCGCGGATTGACAAGATTGCAGAATTCTCAATGGCCTCGTGTGAGGATCCTTTCTTCCCTGTTCGTGGACCATCATCAGCATCGGCGCACTGCTCTTCTAGCACAGCAGGGAGTGCTGCTGATTNCTCAATCACAAAGGACAAGTGTACAATCCAGGTGGACAAATTTACCATCTCTACCAGAACCAGTGATGCTTGCCNCGGTGCTCCAGGTCCAGAGGGCAGTGAATGCTCTAATCATGTGACTGCCGGTATCTCAAGCCGTTCCTCTTCTGAGTTGCACCAGCGTCGGTTTGACACCTCGTCATACCAGCAACGCGCGGAGGCATTGGAGGGGTTGCTGGAGTTCAGTTCCCGGCTCCTACAACAACAGAGGTTCGAAGAGCTTGGGGTGTTGCTGAAGCCATTCGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAGAGCTTTAAAGAAAACTGTGTGATCTGAGGTTTTCTCATGCACTTACAATTTACATGATCGTTGCCATCGGATAGTGTACATCAATATTCTTGTATATTAGGCGATGGAATGTGAAGAGTGGCTTTTATTATTGGCATTGGCATTTTCCATGAGACGCACACTGTTTTGTTTTGTTAACGAGTATGCTTCATATGGAATAATACTGCACCTAAGTTGTATGATACACTCGAAAATCTTTTAAGTTCTAACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00555	100120	105705	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000555s00023345.1	PF00069.20	Pkinase	68	321	1.30E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.736
SRR1783600	control	26.637
SRR1783602	moderate drought stress	30.439
SRR1811619	moderate drought stress	30.624

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.497
DRR006520	Root Summer glycyrrhizin high producing strain	37.178
DRR006521	Root Winter glycyrrhizin high producing strain	6.050
DRR006522	Root Winter glycyrrhizin high producing strain	5.782
DRR006523	Root Summer glycyrrhizin low producing strain	49.964
DRR006524	Root Summer glycyrrhizin low producing strain	50.704
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.959

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.505
SRR2868004	Drought Stress (root)	34.459
SRR2967015	Control (root)	33.132

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.671
SRR9715740	Leaf	8.049
SRR9715741	Leaf	7.439
SRR9715739	Root	14.112
SRR9715742	Root	24.987
SRR9715743	Root	22.235

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.532
SRR8749028	MeJA induced 9h	17.764
SRR8749029	MeJA induced 9h	9.840
SRR8749030	Uninduced	4.505
SRR8749031	Uninduced	3.105
SRR8749032	Uninduced	2.717

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.119
SRR8400027	Control - Root	52.624