Gene detail

Gene detail information of Glyur000555s00023344

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51895.1	0	sulfate transporter 3;1
NR	KEH23810.1	0	sulfate/bicarbonate/oxalate exchanger and transporter sat-1 [Medicago truncatula]
COG	YP_006180043.1	1.00E-85	sulfate transporter family protein [Halobacillus halophilus DSM 2266]
Swissprot	tr\|Q9SV13\|SUT31_ARATH	0	Sulfate transporter 3.1
trEMBL	tr\|A0A072UDA6\|A0A072UDA6_MEDTR	0	Sulfate/bicarbonate/oxalate exchanger and transporter sat-1 {ECO:0000313\|EMBL:KEH23810.1}

Sequence

Transcript Sequence

>Glyur000555s00023344.1
ATGGGTAACGCAGATGATGGGTATGCATACCCTTCGTCGATGAACGGTGAGAGCCCACACCGGGTGGCCATACCTCCCCATCAACCGTTCCTGGAGTCACTCAAGTACTCTGTGAAGGAGACTCTGTTCCCAGATGACCCATTGAGGAAGTTCAAGAACCAAACAGCCTCTAAGAGGTTCGTGCTTGCCCTTCAGTACTTCTTCCCCATCCTGGAGTGGGCACCCAACTACACCTTCCACTTCTTGAAATCTGACCTTATTGCCGGAATCACTATCGCTAGCTTGGCCATTCCTCAAGGCATCAGTTACGCCAAGCTCGCAAATCTCCCTCCAATTCTTGGACTTTATTCGAGCTTTATACCACCATTGATTTATGCCATGATGGGTAGCTCAAGGGATTTGGCAGTGGGAACTGTGGCGGTTGGATCGCTTCTCATGGCTTCCATGTTGGGTCGTGAGGTTAATCCTAACCNGAACCCAAAGCTTTTTCTCCATCTTGCTTTCACAGCTACATTCTTTGCTGGAGTTTTGCAGGCTTCGCTGGGTCTGTTCAGGTTAGGGTTTATTGTGGATTTTCTATCACATGCAGCGATTGTGGGGTTCATGGGAGGAGCAGCCACTGTAGTGTGCCTGCAACAACTAAAAGCGATTCTTGGCCTTGAACATTTCACCCATCAGGCCGATCTCGTGTCAGTTATGCGCTCTGTTTTCACCCAAACTCGTCAGTGGAGGTGGGAAAGCGCTGTGTTGGGATGTTGCTTTATTTTCTTCCTCCTCGTCACAAGATACTTTAGCAAACGACAACCGAGGTTCTTTTGGGTGTCAGCAATGGCGCCATTGACATCCATAGGAGAATTGAAGAAGGGGCTAAATCCACCTTCGGTGACGGATTTGGTGTTAGTGTCGCCTTATATGGGTNCAGCCATCAAAACAGGACTCATCACTGGCATAATAGCACTTGCGGAAGGAATAGCAGTGGGAAGAAGCTTTGCAATGTTTAAGAATTACCATATTGACGGCAATAAAGAGATGATAGCTATTGGGACCATGAATATTTTTGGTTCATTCACCTCTTGCTACCTCACAACAGGACCATTTTCGCGTTCAGCTGTGAACTACAATGCTGGGTGCAAGACTGCAGCATCAAACATTGTAATGTCAGTTGCAGTGATGTTGACATTGTTATTCCTAACACCCTTGTTCCATTACACTCCCCTGGTGGTGCTATCAGCCATAATTGTATCTGCAATGCTTGGCCTCATAGATTATCAAGCAGCCATCCATTTGTGGAAAATCGACAAGTTTGATTTCCTAGTGTGCTTCAGTGCATATATTGGTGTAGTCTTTGGCAGTGTTGAATTTGGCTTAGTAATAGCAGTTGCAATATCTCTACTTAGAGTACTTTTATTTGTTGCAAGGCCTAGGACATTTCTTTTAGGCAACATTCCAAATTCTGTAGCATACAGGAATGTAGAACAATATCCAAATGCACACCATGTTCCTGGAATACTGATTCTCGAAATTGATGCACCAATTTACTTTGCCAATGCAAGCTATTTAAGAGAGAGGATCACAAGGTGGATTGATGAAGAGGAAGACAGGATTAAAACTGCAGGGAAGACCAGTTTGCAGTATCTTGTTTTGGTCAACCCTGGAAGCGAGGTGATGAAGAAGCTGAACAAATCCAAGTTCCTTGATGAAATAGGGCATAAGTGGGTCTTTCTGACAGTTGAAGAGGCTGTTGGAGTATGCAACTTCATGCTCCATGCACACAAACCGAACCCCATGAAAGATGAAGCAGAAGGTTTGAACAGTGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00555	81486	88657	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

cellular_component

GO:0009507 chloroplast

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000555s00023344.1	PF13792.1	Sulfate_tra_GLY	68	150	2.40E-32
Glyur000555s00023344.1	PF00916.15	Sulfate_transp	283	439	1.50E-59
Glyur000555s00023344.1	PF01740.16	STAS	494	548	1.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.201
SRR1783600	control	0.206
SRR1783602	moderate drought stress	0.132
SRR1811619	moderate drought stress	0.201

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.233
DRR006520	Root Summer glycyrrhizin high producing strain	0.192
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.698
DRR006524	Root Summer glycyrrhizin low producing strain	0.612
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.727
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.603

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.105
SRR2868004	Drought Stress (root)	5.175
SRR2967015	Control (root)	4.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.134
SRR9715740	Leaf	0.155
SRR9715741	Leaf	0.826
SRR9715739	Root	0.698
SRR9715742	Root	0.219
SRR9715743	Root	0.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.729
SRR8400027	Control - Root	2.065