Gene detail

Gene detail information of Glyur000555s00023339

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27930.2	4.00E-126	Protein phosphatase 2C family protein
NR	KEH37184.1	0	catalytic/protein phosphatase type 2C [Medicago truncatula]
Swissprot	tr\|Q0WRB2\|P2C73_ARATH	5.00E-165	Probable protein phosphatase 2C 73
trEMBL	tr\|A0A072V583\|A0A072V583_MEDTR	0	Catalytic/protein phosphatase type 2C {ECO:0000313\|EMBL:KEH37184.1}

Sequence

Transcript Sequence

>Glyur000555s00023339.1
CGCATGGGTGTTATTGTGGTAATAAGACCCACCATCACCCACCACCTTACATAACAATTTACAAGAAGTAACAAGCTAGTTGTGCTTTACAATTTGGGTTCGTGGAACGTGAGTAATAAATACATAGCTTCAGAGAAATCATCATCTCTCAGTTCCTCAGGATTTGTTTGTTGGTCATTCCAATCTCAGTGTAGAATTGCAACTCTGACTTGGAATGTAGTAGTGGCCATGGTTCATTTTCCATCTCTTGTCAATGGCTTGGCAAGAACTGTGTCATTGAAGAAAGAGAAGAGTCATGGAAAGGATGATGATGCAAGGAAAGTTGTGGAAGCATTGGCAAAGGAAGCAAAGAAGAATGAAATGTTATTGAAGTCATCTGGAATTATCAAGTCTGTCAAGGCCAACAATTTTGCTTGTGTGTTCACTAAGAAGGGCCAAAAAGGAGTCAATCAGGATTGCCTTATTGTTTGGGAGGAATTTGGCTGCCAAGAAGACATTATCTTCTGTGGAATTTTTGATGGACATGGACCTTGGGGACACTTTGTATCTAAAAGGGTCAGGAAACTACTACCTGCTTCTTTGCTGTGCAATTGGCAGGAAAATCTGGCTGCAAAATCACTTGACCTTGATTTTAAGATGGAAACAACAGAAGGGAATCTCCATGGGTTTGACATATGGAAGCAGTCCTACATAAAGAGTTGTGCTGCAATTGATCAGGATCTAAAGAAGCATACTGAGATTGATTCCTTTCGAAGCGGTACTACAGCTTTGACAGTTATCAAACAGGGTGAACATCTCATTATAGCAAATGTTGGTGATTCTAGGGCTGTCTTGGCAACCACTTCAGAGGATGGCACCTTGACTCCTCTTCAGCTTACCACTGACTTGAAGCCAAATTTACCAAAGCGCATAACACAATCCAGAGGGCAGGTATTTTGTTTGGAGGATGAACCAGGAGTGTACAGGGTGTGGAGGCCAAATGGTAAGACCCCGGGACTAGCAGTATCTAGANCATTTGGTGATTACTGCGTAAAAGATTTTGGACTAATCTCTGTGCCAGACGTGACACAAAGAAAACTCACCACTAGGGATCAATTTGTCATCTTGGCAACAGATGGGGTATGGGATGTTATTTCCAACCAAGAGGCTGTCAAAATTGTTGCTTCAACACCACACAGAGAAAAAGCAGCTCAAAGGCTAGTGAAATGTGCCACACATGTATGGAAACGCAAGAGAAGAGGCATTGCAACTGATGATATATCAGCTATTTGCCTCTTCTTTCACCCTCCCCCCTCTCATCAACTCCCTACCACTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00555	55957	59677	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000555s00023339.1	PF00481.16	PP2C	77	328	5.40E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.219
SRR1783600	control	0.212
SRR1783602	moderate drought stress	0.057
SRR1811619	moderate drought stress	0.057

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.230
DRR006520	Root Summer glycyrrhizin high producing strain	0.236
DRR006521	Root Winter glycyrrhizin high producing strain	2.306
DRR006522	Root Winter glycyrrhizin high producing strain	2.422
DRR006523	Root Summer glycyrrhizin low producing strain	0.165
DRR006524	Root Summer glycyrrhizin low producing strain	0.167
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.154
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.946

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.709
SRR2868004	Drought Stress (root)	17.750
SRR2967015	Control (root)	8.520

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.916
SRR9715740	Leaf	22.943
SRR9715741	Leaf	23.794
SRR9715739	Root	0.192
SRR9715742	Root	0.866
SRR9715743	Root	0.619

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.002
SRR8749028	MeJA induced 9h	12.129
SRR8749029	MeJA induced 9h	7.039
SRR8749030	Uninduced	9.465
SRR8749031	Uninduced	21.032
SRR8749032	Uninduced	8.218

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.481
SRR8400027	Control - Root	0.738