Gene detail

Gene detail information of Glyur000555s00023336

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16770.1	4.00E-27	ethylene-responsive element binding protein
NR	ACM79120.1	6.97E-83	ethylene-responsive factor 2 [Halimodendron halodendron]
Swissprot	tr\|P42736\|RAP23_ARATH	3.00E-48	Ethylene-responsive transcription factor RAP2-3
trEMBL	tr\|D8KYG4\|D8KYG4_9FABA	3.00E-83	Ethylene-responsive factor 2 {ECO:0000313\|EMBL:ACM79120.1}

Sequence

Transcript Sequence

>Glyur000555s00023336.1
TCCGTGCCGTTACATCCCAAAACCACAAGACTACCCCTTCTCCCAAACACCGTCTTAATTTTGACCCCAAACCCAACCAAAACTCGCCACGCACACCCCCCAACCCTTACTCTCCACCGTTTGATCATCAAATCAACCCTCTATGATTTCAGAAATTTTAAGTGGGACCAGTGAGTGTATGTGATAAGCAACTAGAGAAGATGAGGTCTATATAAATCTAGATACACCGCAACCTCTCTTTCTCCCAACTTCCTCACANTTATTTCTTTCTTCTTCTTTTCTCTTGTTTGTTTGTCACGAGACTCATAGTGAGTGACANTTACAACAACAAAGCTGTGAAATATGTGTGGAGGCGCTATCATTTCGGACTTCATTGGTGTGAAGCGTGACCGGAAGCTTACCCCACAGGATTTCTGGTCCGAACTTGACCCTTTCTCTGACCTCCTTGGATTCGATTCCAGCTCCATCACTTCTTCCAAACAGTCACCACCACCACCACCACCACCCATCCACCGGGACAAAAAAGTGGTAGCATGTGACAAGGCGGAGAAGAAGAGAAGCGTGGGGAGTGCTGCTGCAGCAGGAGAAGTAGTGAAGAAGAGGGGTAAAGGAGATGAGCAGCGAGGGAGGAAGAACGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCCGCAGAGATAAGGGACCCACACAAGGGTGTCCGTGTCTGGCTCGGCACCTTCCCCACCGCCGAAGAAGCCGCCAGAGCCTACGACGACGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAACTCAATTTCCCAGCTGCCACCACCGCCGCCACTTCCCCTCCGCCACCGCCATCCAAGAAGCAGCGCTGCCTCAGCCCCGATGACCAGGCCAGCTCCCAGGCCAGCTCTGTCATGAGCTCACAGCCCACCGGGCTTGGGCTTGAGGAGGAGATCGAACTCCAACAGCAAATCTCAAACCTCGAATGCTACATGGACCTGTGGACTCTTGACGACGTCGTTATGCCCAACCGTCATCACCTGGTTTACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00555	21764	23829	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000555s00023336.1	PF00847.15	AP2	99	148	6.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	189.900
SRR1783600	control	195.385
SRR1783602	moderate drought stress	267.888
SRR1811619	moderate drought stress	276.731

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.459
DRR006520	Root Summer glycyrrhizin high producing strain	64.339
DRR006521	Root Winter glycyrrhizin high producing strain	1940.018
DRR006522	Root Winter glycyrrhizin high producing strain	1901.992
DRR006523	Root Summer glycyrrhizin low producing strain	167.933
DRR006524	Root Summer glycyrrhizin low producing strain	171.192
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.607
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.301

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	190.734
SRR2868004	Drought Stress (root)	243.322
SRR2967015	Control (root)	195.362

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	140.614
SRR9715740	Leaf	64.513
SRR9715741	Leaf	90.251
SRR9715739	Root	364.655
SRR9715742	Root	411.237
SRR9715743	Root	363.634

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	131.523
SRR8749028	MeJA induced 9h	214.894
SRR8749029	MeJA induced 9h	157.755
SRR8749030	Uninduced	599.022
SRR8749031	Uninduced	347.798
SRR8749032	Uninduced	408.906

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	361.033
SRR8400027	Control - Root	305.559