Gene detail information of Glyur000553s00020405 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33640.1 | 3.00E-150 | DHHC-type zinc finger family protein |
| NR | XP_007135968.1 | 0 | hypothetical protein PHAVU_009G006900g [Phaseolus vulgaris] |
| Swissprot | tr|Q6DR03|ZDHC3_ARATH | 0 | Protein S-acyltransferase 21 |
| trEMBL | tr|V7AQN1|V7AQN1_PHAVU | 0 | S-acyltransferase {ECO:0000256|RuleBase:RU079119} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00553 | 112447 | 118069 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000553s00020405.1 | PF01529.15 | zf-DHHC | 138 | 281 | 1.80E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.420 |
| SRR1783600 | control | 27.373 |
| SRR1783602 | moderate drought stress | 19.132 |
| SRR1811619 | moderate drought stress | 18.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.992 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.967 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.563 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.637 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.530 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.477 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.161 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.983 |
| SRR2868004 | Drought Stress (root) | 36.154 |
| SRR2967015 | Control (root) | 37.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.024 |
| SRR9715740 | Leaf | 3.252 |
| SRR9715741 | Leaf | 5.844 |
| SRR9715739 | Root | 16.243 |
| SRR9715742 | Root | 24.702 |
| SRR9715743 | Root | 21.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 101.409 |
| SRR8749028 | MeJA induced 9h | 55.103 |
| SRR8749029 | MeJA induced 9h | 58.561 |
| SRR8749030 | Uninduced | 10.093 |
| SRR8749031 | Uninduced | 7.123 |
| SRR8749032 | Uninduced | 9.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 44.506 |
| SRR8400027 | Control - Root | 42.692 |