Gene detail information of Glyur000553s00020403 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20810.1 | 3.00E-64 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| NR | AFK45513.1 | 9.69E-110 | unknown [Lotus japonicus] |
| COG | YP_002463951.1 | 8.00E-11 | FKBP-type peptidylprolyl isomerase [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q9LM71|FKB18_ARATH | 5.00E-79 | Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic (Precursor) |
| trEMBL | tr|I3SZ21|I3SZ21_LOTJA | 4.00E-110 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00553 | 102472 | 104357 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000553s00020403.1 | PF00254.23 | FKBP_C | 108 | 250 | 4.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.994 |
| SRR1783600 | control | 3.780 |
| SRR1783602 | moderate drought stress | 2.438 |
| SRR1811619 | moderate drought stress | 2.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.269 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.826 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.293 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.867 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.377 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.992 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.251 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.169 |
| SRR2868004 | Drought Stress (root) | 9.970 |
| SRR2967015 | Control (root) | 9.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.793 |
| SRR9715740 | Leaf | 43.382 |
| SRR9715741 | Leaf | 33.702 |
| SRR9715739 | Root | 3.076 |
| SRR9715742 | Root | 4.444 |
| SRR9715743 | Root | 3.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.517 |
| SRR8749028 | MeJA induced 9h | 6.308 |
| SRR8749029 | MeJA induced 9h | 3.685 |
| SRR8749030 | Uninduced | 3.324 |
| SRR8749031 | Uninduced | 1.081 |
| SRR8749032 | Uninduced | 1.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.287 |
| SRR8400027 | Control - Root | 13.982 |