Gene detail

Gene detail information of Glyur000553s00020396

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35300.4	0	tonoplast monosaccharide transporter2
NR	XP_004500833.1	0	PREDICTED: monosaccharide-sensing protein 2-like isoform X1 [Cicer arietinum]
COG	YP_003405887.1	5.00E-40	sugar transporter [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q8LPQ8\|MSSP2_ARATH	0	Monosaccharide-sensing protein 2
trEMBL	tr\|V7AQX5\|V7AQX5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07969.1}

Sequence

Transcript Sequence

>Glyur000553s00020396.1
ATTATAAAATAAAGAGAAGGCAAGAGATACAACAAGAGAAAGAGTACAAAGAGTAGTGAGACCTGTGTTGATTATGAATTGATTGCTACAACAACAAGGGCAAAGATTACGCCCCTGACGTGATTCTCTCTGCTTTGATTCACTGTACAGGCGAGGCCGAGGAGGAGGGTTTTGGTTTGATTTGGCGTCTCTTCCAAACAAGCCCTTTTTTCTTTCTGTCTTTTACTATACTGAGTGAGGAGTGAGGAGTGAGTGGTGAGTGTTGAGCGAGGGGGCACTCTGAGCCAAAAAGCGATCTGTATTTTCGGCTTTCACAACAGTACGAACTACAGAAATGAAAGGTGCTGTTCTGGTGGCTATTGCGGCTTCCATAGGGAATTTCCTGCAGGGATGGGATAATGCTACTATTGCTGGTGCCATTGTTTACATTAAGAAAGACCTTGCCTTGCAAACAACCATGGAAGGACTTGTGGTGGCCATGTCCCTCATTGGAGCAACTGTGATCACAACATGCTCTGGCCCCATATCAGATTGGCTTGGTCGGCGACCGATGCTGATAATCTCATCTGTGCTATATTTCTTGGGTGGTTTGGTGATGTTGTGGTCCCCTAATGTTTATGTGTTATGCTTGGCAAGGCTACTTGATGGATTTGGGATTGGCCTTGCTGTTACTCTTGTTCCACTCTATATATCTGAGACTGCCCCATCTGAAATAAGGGGATCGTTGAATACACTTCCTCAGTTCAGTGGTTCTGGAGGCATGTTTTTATCATATTGCATGGTGTTTGGGATGTCATTGACTACCTCGCCTAGCTGGAGAATGATGCTTGGGGTTCTTTCTATCCCTTCTCTCATCTATTTTGTATTGACAGTATTTTTCTTGCCCGAGTCTCCTCGGTGGCTGGTGAGTAAAGGAAAGATGGTGGAGGCTAAAAAGGTTCTCCAAAGGTTACGCGGCCGGGAAGATGTGTCAGGCGAGATGGCATTGCTGGTCGAAGGTCTTGGGATTGGAGGTGATGCATCTATAGAAGAGTACATAATAGGCCCTGCTGATGAGGTGGATGGTCATGATCAAACAACAGAGAAAGACAAAATCCGATTATATGGATCCCAAGCAGGCCTCTCTTGGTTAGCAAAACCTGTAACTGGACAGAGTTCTCTTGGCCTTGTGTCACGCCATGGAAGCCTTGCCAACAAAAGCATGTCCCTCATGGATCCTCTTGTGACCCTATTTGGTAGCGTTCATGAGAAGCTCCCTGAGACAGGAAGCATGCGAAGCACTCTATTTCCGAATTTNGGAAGCATGTTCAGCACAGCTGAGCCTCATGTTAAACATGAACAGTGGGATGAAGAGAGCCTAAACAGAGAAGGTGAGGACTACGCCTCAGAAGCTGGTGCTGGGGACTCTGATGACAATTTGCATAGTCCTTTAATCTCACGTCAAACAACAAGCCTTGAAAAAGACCTGCCTCCTCCTTCCCATGGCAGTATCTTGAGCAGCATGAGGCGCCACAGTAGTCTCATGCAAGGGTCAGGTGAACCAGTTGGTAGTACGGGCATTGGTGGTGGCTGGCAGCTGGCATGGAAATGGTCTGATAATAAAGGTGAGGATGGTAAAAAGCAAGGAGGGTTTCAAAGGATTTATTTGCATGAGGAGGGAGTTTCTGCATCTCGACGTGGATCCGTTGTATCAGTTCCTGGTGAAGGTGAAGGTGAATTTGTCCAGGCTGCTGCCTTGGTTAGCCAACCTGCTCTTTACTCCAAGGATCTAATTGATGAACACCCAGTTGGGCCTGCAATGGTTCACCCATCTAAGACTGCTTCAAAGGGTCCCATTTGGAAAGCTCTTCTTGAACCCGGGGTTAAGCATGCATTGTTTGTTGGGATAGGAATACAAATGCTTCAGCAGTTTTCGGGGATAAATGGGGTTCTATATTACACTCCTCAAATCCTGGAAGAGGCCGGTGTTGGAGTTCTGCTTTCAGATTTAGGCCTTAGTTCAGAGTCTTCATCGTTCCTTATCAGTGCTTTGACAACCTTCTTGATGCTTCCCTGTATAGGCTTAGCCATGAGGCTTATGGATGTCGCTGGCAGAAGGCAATTACTACTTACTACAATCCCCGTGCTGATAGTGTCACTCGTTATATTGATCATTGGAGGATTAGTAGATTTTGGCACTGTTGTCGATGCAGCAATCTCAACTATATGCGTTGTGGTTTATTTCTGCTGCTTTGTCACGGCTTATGGACCAATTCCAAACATCCTTTGCGCGGAGATTTTTCCCACAAGGGTGCGTGGCCTCTGCATTGCTATCTGCGCGTTAGTGTTCTGGATTGGAGACATCATTGTCACATACTCGCTGCCTGTGATGCTCAGTTCTTTAGGACTGTCTGGTGTTTTTGGCATTTATGCCATTGTGTGTTTCATCTCCTGGATATTTGTGTTTCTGAAGGTTCCAGAAACAAAGGGCATGCCCCTTGAAGTCATCACTGAATTCTTTTCTGTTGGTTCAAGGCAGGCTGATTCTGCCAAGAACGAGTGACAGAAATTTGTGATATACTTGTGTAATTTTAGTCGCTAAAGCCACCATCTCTCNTATTTATAGATTTTGCTTGTCATAAGTTTGTGTGGAGGAGGATATCTTCTAGTTCAAATATTATTCTTTCATATAAAGTTTTGCATTCTAAAAGTGGAAATAGCCTTCCGAATTATCGACTGAAGGTGCATGATTTGAAGGCTTTGATGCAAAGTTTGACGAGCTTTCATAGTTTGCCCCGTGATTAAGACTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00553	75823	82388	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000553s00020396.1	PF00083.19	Sugar_tr	7	217	6.80E-52
Glyur000553s00020396.1	PF00083.19	Sugar_tr	500	720	1.70E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.947
SRR1783600	control	49.088
SRR1783602	moderate drought stress	45.267
SRR1811619	moderate drought stress	45.058

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.020
DRR006520	Root Summer glycyrrhizin high producing strain	60.211
DRR006521	Root Winter glycyrrhizin high producing strain	130.376
DRR006522	Root Winter glycyrrhizin high producing strain	126.617
DRR006523	Root Summer glycyrrhizin low producing strain	57.124
DRR006524	Root Summer glycyrrhizin low producing strain	56.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.126
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.950

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.548
SRR2868004	Drought Stress (root)	64.605
SRR2967015	Control (root)	69.877

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.396
SRR9715740	Leaf	33.726
SRR9715741	Leaf	30.812
SRR9715739	Root	94.333
SRR9715742	Root	105.354
SRR9715743	Root	105.919

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.863
SRR8749028	MeJA induced 9h	13.123
SRR8749029	MeJA induced 9h	9.114
SRR8749030	Uninduced	1.722
SRR8749031	Uninduced	0.413
SRR8749032	Uninduced	1.216

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.952
SRR8400027	Control - Root	80.813