Gene detail information of Glyur000553s00020394 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20850.1 | 4.00E-136 | xylem cysteine peptidase 2 |
| NR | XP_003522989.1 | 0 | PREDICTED: xylem cysteine proteinase 2 [Glycine max] |
| COG | YP_504536.1 | 3.00E-19 | peptidase C1A, papain [Methanospirillum hungatei JF-1] |
| Swissprot | tr|Q9LM66|XCP2_ARATH | 1.00E-173 | Xylem cysteine proteinase 2 (Precursor) |
| trEMBL | tr|I1K796|I1K796_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G01730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00553 | 56231 | 58151 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000553s00020394.1 | PF08246.7 | Inhibitor_I29 | 37 | 93 | 2.90E-18 |
| Glyur000553s00020394.1 | PF00112.18 | Peptidase_C1 | 124 | 323 | 8.60E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.429 |
| SRR1783600 | control | 1.421 |
| SRR1783602 | moderate drought stress | 2.371 |
| SRR1811619 | moderate drought stress | 2.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.112 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 95.409 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 96.526 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.173 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 157.372 |
| SRR2868004 | Drought Stress (root) | 80.321 |
| SRR2967015 | Control (root) | 100.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.958 |
| SRR9715740 | Leaf | 0.484 |
| SRR9715741 | Leaf | 1.902 |
| SRR9715739 | Root | 2.277 |
| SRR9715742 | Root | 75.331 |
| SRR9715743 | Root | 60.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.055 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.088 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.955 |
| SRR8400027 | Control - Root | 30.504 |