Gene detail information of Glyur000553s00020392 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33620.4 | 7.00E-38 | AT hook motif DNA-binding family protein |
| NR | XP_007135982.1 | 6.54E-110 | hypothetical protein PHAVU_009G008300g [Phaseolus vulgaris] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 7.00E-11 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|V7AUS6|V7AUS6_PHAVU | 2.00E-110 | Uncharacterized protein {ECO:0000313|EMBL:ESW07976.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00553 | 51692 | 55740 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000553s00020392.1 | PF03479.10 | DUF296 | 172 | 289 | 4.60E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.256 |
| SRR1783600 | control | 21.286 |
| SRR1783602 | moderate drought stress | 26.884 |
| SRR1811619 | moderate drought stress | 26.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.907 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.322 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.952 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.928 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.704 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.879 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.460 |
| SRR2868004 | Drought Stress (root) | 12.809 |
| SRR2967015 | Control (root) | 17.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.710 |
| SRR9715740 | Leaf | 12.162 |
| SRR9715741 | Leaf | 11.560 |
| SRR9715739 | Root | 57.594 |
| SRR9715742 | Root | 34.847 |
| SRR9715743 | Root | 37.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.412 |
| SRR8749028 | MeJA induced 9h | 23.829 |
| SRR8749029 | MeJA induced 9h | 16.562 |
| SRR8749030 | Uninduced | 6.364 |
| SRR8749031 | Uninduced | 3.028 |
| SRR8749032 | Uninduced | 6.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.831 |
| SRR8400027 | Control - Root | 36.251 |