Gene detail

Gene detail information of Glyur000553s00020391

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76450.1	4.00E-70	Photosystem II reaction center PsbP family protein
NR	XP_003603874.1	9.42E-141	PsbP domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q9S720\|PPD3_ARATH	6.00E-92	PsbP domain-containing protein 3, chloroplastic (Precursor)
trEMBL	tr\|G7J6G6\|G7J6G6_MEDTR	4.00E-141	Photosystem II reaction center PsbP family protein {ECO:0000313\|EMBL:AES74125.1}

Sequence

Transcript Sequence

>Glyur000553s00020391.1
CTTTGGCAAATTGGCTTTCTATTGTTTTTCCCCTTTTTTTGACCAAAAAAAAATTGTTTTCCCCCTTTTTAATTTTAGAATTTTTTAAAATAGTAACAATAATAATAGTGGAAATGGAGGCTGAAAATCTAATCAGGAAGGAATGGCGTCCATTTCGTGGCTCAGTTGTCTGTATATGCGACCAACAACATGCGACTTCACAGCCTCTGCCGGCGACAAAGGTTTTTCAGCTCCCATAACCGTGGAAGTGGAACATCATAAGAAAAGACCGCGCTTACTTTCTTCCCTCGAAGAAGGATATGCGGTTAATAAAAGACAACTCATTCTTTACACCGCAATAGCTGCACTTGCAGCCCCAGCTACTGTCCCAAATGCATTGGCACTCAATGATGTGTCCGAGGATGTTCGTGTCTACGCTGATGATGAGAACAAGTTCAAGATAGAGATTCCTCAAGAGTGGCAAGTAGGAACAGGAGAGTCTAGTGGGTTTAAATCATTAACTGCTTTCTTCCCAAAAGACGAATCTAATTCCAATGTGAGTGTTGTGATCACAGGGCTGGGACCGGATTTCACTAGGATGGAATCGTTTGGCAAAGTTGAAGAATTTGCAGACACTCTGGTTAGTGGGCTGGACAGAAGCTGGACAAGGCCCCCGGGTGTGGCTGCTAAACTCATAGATTGTAAATCATCTAATGGATTTTACTATATCGAGTATACGCTGCAAAATCCTGGTGAGAGTCGCAAACATCTATATTCAGCTATTGGGATGGCAACAAATGGTTGGTATAACAGATTGTATACGGTGACAGGACAGTTTGTAGAAGGGGAAACAGACATGTATGCCTCCAGAATTAAGAAGGCGGTTGCATCATTTAAGTTCATATAAAGAAATGATCACGACGAAGGGGAAATTTTCTCATGGCTTTCTTTGAGGAACTCACTCACAATTAATGTTTCCGTGACATTAATTTTCTAAGCTATAAATGGCTGTCTAAATCCGATTAGTATGATATTTTTTTTTTTTGATCAAGCGATTAGTATGATATTTACCATGACATTTCCTTCAAAATTGATAAACCAAAGCAATATAATAAATGGCACTAATTAACACAATAAATAAATTATTTTGCAGTGATTGTAATTTGCAACTTGTAAGTACCTTGGATTAAACCTTACATCAATGGTATGCTATGTAAAGAGATAATAGGAGAATAGAAAATGGATAGAAAAGAATAATGAGAAAGTAGGATGAATTTATATATAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00553	41580	44128	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000553s00020391.1	PF01789.11	PsbP	73	246	7.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.710
SRR1783600	control	1.761
SRR1783602	moderate drought stress	4.762
SRR1811619	moderate drought stress	4.695

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.947
DRR006520	Root Summer glycyrrhizin high producing strain	1.899
DRR006521	Root Winter glycyrrhizin high producing strain	0.879
DRR006522	Root Winter glycyrrhizin high producing strain	0.855
DRR006523	Root Summer glycyrrhizin low producing strain	0.760
DRR006524	Root Summer glycyrrhizin low producing strain	0.950
DRR006525	Leaf Summer glycyrrhizin high producing strain	172.287
DRR006526	Leaf Summer glycyrrhizin high producing strain	171.504

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.605
SRR2868004	Drought Stress (root)	5.303
SRR2967015	Control (root)	5.083

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	96.821
SRR9715740	Leaf	102.325
SRR9715741	Leaf	75.869
SRR9715739	Root	0.430
SRR9715742	Root	2.230
SRR9715743	Root	1.544

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.049
SRR8749028	MeJA induced 9h	0.753
SRR8749029	MeJA induced 9h	1.525
SRR8749030	Uninduced	1.702
SRR8749031	Uninduced	1.686
SRR8749032	Uninduced	0.381

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.397
SRR8400027	Control - Root	8.141