Gene detail

Gene detail information of Glyur000552s00024339.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G28420.1	homeobox-1
NR	XP_006583835.1	PREDICTED: uncharacterized protein LOC100818817 isoform X2 [Glycine max]
trEMBL	tr\|K7L2S8\|K7L2S8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G32180.3}

Sequence

Transcript Sequence

>Glyur000552s00024339.1
ATTCGAAGAAGATAAAAAATTTAAAAAAGGAAATTAATATGAAAGGTGGTGATGGAATTATAGTCGTAGTAGCAGTCAAGAGCAACTGTTGTTGGTTTATTATTTTGGTTTTTCGATTATTAATATTCTTGCCATTGTTTTCCTCGGTTCCTTTATTCTTCTTCGTTGTTCTTTCTTTTCAATTCCTCGTTGCACGCTGCTTTTCTAATTCCTTTTTTTTTTTGCTTCGTTTATTGTTGCTATTATCCATCTATTTATATTTACTTCGATCTCAGAACGATAATAATCCTCGTGCCTTTCCATTGCTTGAGTATCACGGAATTTTNGTTCGAGAGAGAAAAAGGCAAAAGGAGAGAACCGAAATTGATTCCTTTGGGAAACCCTAATTTCTGTTTATTCTTCGCTAGAGGGTTCTGCGATTTCTAGGGTTTGTGAAGCAGAGGCAGCGAAGACGCGATTATTGATCGGTTTTCGTCGATGGAGGGCGAGGCCGGTTCGGAGGGAGGTAGTAATCGGAAAAGGGGTGCTGCAGACGATAACAGCAATGAGAACGACAACACCAACAACAACAACGATGGAAGCAATAGCAAGGTTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACGCCCTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCCTTGGATAATTACCCTTCGGAGGGAATGAGGGTGGAGCTGTCAGAGAAATTGGGGTTGTCGGATCGGCAGCTNCAGATGTGGTTCTGCCATAGGAGGTTGAAGGATAAGAAGGACTCGGCGCCGAAGAAGCCGCNGCGGAAGGCAGCAGTGGAGCCTTTGCCGGTTTCCCCTGTGGATGAACTCAGATTGGGCACTGAACTTGGTAATGAGTATGGATCAGGGTCAGGTTCAGGTTCAAGTTCAAGTCCGTTTACCCGTTCGGAGCCCTGGAATGCAGTGCCTCAGGCTTTTCCCGGTTATTATGAGTCCCCTCAGGCTGAATTGGAGCTTAGAGCAATTGCTTGTGTGGAGGCACAGTTAGGGGAACCATTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCATTTGGGGCACCTATAGCAGTTACAGAACACCAGAAGCGACCTAGTCTTGTCTATGACAGTAAAATATATGAAAGACATGGTGTCAGAACAAATAAGGCTATGGCAAGGACATTCCGTGAATATCAATTTCTACCAAACCAGTCTGGTATTAGATCAGATGCTTTTGGACAATTCAGCCAATCTCATTTACATGATCCAACGGACGGTCCTGCCAGAAATNCCCCTTTCGTGCCTGGACATGAACAGCTGCCTAGAAGTCATGCCACACAAGGCCATTCTTCTCGTGTTTGTCTTTTATCTCTACAAGACAAGCAGGGGAGTCCCTATCAATCTCCTACTCGAGACAATAATGATGTCCCCCAAAGGGAGTATTACACAAACATAGCTAATGTTGGAGCGAACTCTCATATCACCGATCACCAATTTGTTGGGCTAGAAAATCCCCATGCTTTACCTAGTGGACAAGTTTTGCATAACAATGCNATGCGGATTGAGAGGAAACGAAAGAGTGATGATGCCAGAACTACAAAGGAAGTTGAAGCCCATGAGATGAGAATCCGGAAAGAGCTCGAGAAACAAGATAACCTTAGACGAAAGAACGAGGAGCGAATGAGGAAAGAAATGGAGAGACAAGATCGTGAAAGAAAGAAAGAAGAAGAGAGGTTGATGCGTGAGAGACAGCGTGAAGAGGAAAGAACAAAACGAGAGCAAAAACGNGAACTTGAACGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTAAAAGCTGAGAAAATGAGGCAGAAAGAAGAGCTTCGCAAAGAGAGAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATGGCTAAGGAATCTATGGAACTAATTGATGATGAGCAGCTGGAAATGATGGAATTGGCTGCCTCAAGCAAGGGGCTTTCCTCTATTGTCCATCTTGATTTTGAAACTCTGCAAAACCTTGAATCATTTCGGGATTCATTGTGTTTTTTTCCACCTGAGAGTGTAAAGTTAAGAAAACCATTTGCTATCCAACCCTGGATCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTCTGGAGTTATGGCCTTTTACTCTTGATGAGTTTGTGCAAGCATTTCACGACTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAGGGTGATAATAAAAGACATAGAAGGTGTTGCAAGGACACCTTGTACAGGATTAGGAATGAATCAGAATGGTGCTGCTATTTCTGGAGGTGGCCATCCAGAGATTGTAGAAGGGGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTAAATCAGTTGACATGGCCAGAAATTCTCCGACAGCTAGCACTGTCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTGTTGCATGGTCATGTGCAAATGATAAAGACGAGGGAAGAAGTTGTGAAGATATCATTTCTACGCTTCGTAATGGTTCAGCAGCCGAAAATGCAGTGGCAAAAATGCAGGAGAAAGGTCTATTAGCACCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCATGTTCTCTCACTAGAGGGTAGCAAGGGNAATACAGTGCTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGACCTGACAACCAGCAAGACACCCGAAGCATCAATTTCTGTTGCTTTGACAAGAGATACCAAGCTTTTTGAAAGAATAGCTCCATCAACATATCGTGTACGTGCTGCATTTAGGAAGGATCCTGCCNATGCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGTGGGGGAAGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGTTGATGATACGGTAAATCCTTCAAGTGTTAACATAACATCTGAACAGTGTGATGATTTATCATCAAATGGAAAAGAAAATTTGGGTAATGATGTAGCACTTAAAGATGAGTTTGATAAGGGTCTGCCTTGTTTTTCTGAGAATGGTTCCAAGAATGCTGATTGTCCAAGTTCTGTTATCGGACAACCTGTTGCTTGTGAAGATCTAAATGCTGGAAATCTTGGTGAAGATAATGTGGAAATTGATGAAAGCAAGTCTGGAGAATCATGGGTTCAAGGGCTTACAGAAGGAGAATACTCTGATCTCAGTGTCGAGGAGCGATTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTAAGGAAGCAAATGTCGGCAGAAGCACAGATAGATAAAATTTGTCTGAAAGATGATAATTTTATTAAATCAGATTTTCTTCCTATCAATGGGAATAAAATTGAAACACAATACCCATGTGCTTCTGTGGAGGGCAACCAAAGCCCATTGCTTGACATTAATGTTTGCAATAATAATAATGAGGCATCTCCCAGCACTACAGAAAATAAAAAACCAGCTCCTGTTGCTCAAAGCCTGTCTATTGAAAAGCCCTCATCAGTTCAAGATCTCTGCCCTGGTCCAGATAACCNTCAGACTCTGTTATCTGCACAATGTTCGAAAAAGTTGCGATCTCAGTTGAAAACTTATATTTCCCACATAGCAGAGGAGATGTATGTCTACAGATCCGTACCCCTTGGGCAAGATCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAGTGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCATGATGGCAAATGGAGGCTAATTGATTCTGAAGAGGCCTTTGATGCACTTCTGAATTCACTGGATTCACGNGGGACTAGGGAATCTCATTTACGTCTAATATTGCAAAAGATTGAGAATTCCTTTAAGGAAAATGTTCGAAAGAATACAGAAAGTGCCAAAATTGGAAACAATGATGAAACTTGTGTTAAAAATGAAGTTGATGAAACAGATCCCAGTCCTGATCACCATACTGGATCTGACAGTCCTAGCAGTACTCTTTGTGGCTTGAACTCTGATACTTCAGAAACTTCATCATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTTCAAAAATGGATATGGAAAGAATGCTATAACTCATCAATATTACGTGCAATGAAATATGGGAAAAAGAGATGCAAATCTCAGGTTGACATGTGTGACATCTGCCTCAACCCTTATTTCTTTGAAGACTCCCATTGCAGTTATTGCCACCGTACTTTTTCCTCAAATGATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGGGACAAGTTACCCAAAGATATTTGTATTTTGGATTCTTCTCTTCCGTTGCGGACAAGATTGCTTAAGTCACTGCTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCAATCAATTTGGACAGAAGATGTTCGGAGGCATTGGGGTGTGAAGTTGAGTAAATCATCTTCTGTTGAGGAACTTCTACAGATATTGACCCTATTTGAGAGAGCATTAAAGCGAGATTTTTTGTCATCGCCCTTCTCTACAACAGGGGAACTGTTGGGGATGAGTGCTATGTTGGAGAGTGTTGCACATACTTCTATGGATCTTGAACCAGTTTCTGTACTTCCATGGGTCCCATGGACCACTTCAGCTGTGTCTCTCAGACTTTTTGAGTTTGATGCCTCCATTCTCTACGTACAGCTTGAGAAACCTGAGCCTCGTGAGGAGAAAGAAGCTAGAGAATACATAAAGCCTCCTTCAAGATATAGTCTCGTCAAATCTACTAAAGTGGTCGAACCNGCAGACTTGTACCATGATGAATTCATGAAAGTTAAATCTGCTCCTATGAAAATTGTCCGAAGCAGCAATAAACGGGGACGAGTGAGTCGTGGTAAAGGACGGATTAAAAAGCTGTCTAAAAGAATGAACTATTCCAAACGAGACACTGGCCACCGTAATGTTAAGGTCACTGAGAACCTGAGTCAAAGAATAAAACAGCAGGGACAAGGATCACATGGACAAGCTGGGGGACACGGCCGCCGAACAGTCAGGAAAAGGAGAGTGGAGAAGAGGGCTGTTGAAGATTTGTTGCTGGGACATAGGGCTGCCACTCATAGCTCCAATATTGGTAGAGAACCATTGAGAATCTTGGATGAGGACTGGAATGATGAGAAGGCAAGTCCTATGACTCCCATCCAGACAGGAGCTGCTGACATTGGCGACAGCACTGAAGAGGTTGAATCTGATGACAACGCCCAAGCCGTGGAATCTGATGACAATGTGCAGGCCGTGGAATCTGATGACAATGTCCAAGCAGTTGAGTATGGGCAAGGAAACTGGGAGATAGGTTTTAATGGTACCCCCAACAGATGGAGTAGGGATATGGTTGGAATGAGTGACGAAGATGTGGAAGCTTCTGAAGATGACAATGACAATGGCATTGAAGAGAATGAAGAGGAGGAGGATTCAGAGGCTGATGTTATGAGTGAGGGTTCAGATGGTATGGCAAATAGAGTTGTAAGTGAAGAAAGCTCAGACTCGGCTGTCTCTGAGGATTCTTCTGATTAGAACATTGTTTTTTAAGGTATTGCATTTCATGGCTGCATTAAATTTTTTATATTGCAGCTTACAAGGTACTTGTGCACTTGTGCTTCAATGCATGTCATGGCTTGAATGGTAGATCCTTGTATATTATTCAT

Protein Sequence

>Glyur000552s00024339.1
MEGEAGSEGGSNRKRGAADDNSNENDNTNNNNDGSNSKVANSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSEGMRVELSEKLGLSDRQLQMWFCHRRLKDKKDSAPKKPXRKAAVEPLPVSPVDELRLGTELGNEYGSGSGSGSSSSPFTRSEPWNAVPQAFPGYYESPQAELELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIAVTEHQKRPSLVYDSKIYERHGVRTNKAMARTFREYQFLPNQSGIRSDAFGQFSQSHLHDPTDGPARNXPFVPGHEQLPRSHATQGHSSRVCLLSLQDKQGSPYQSPTRDNNDVPQREYYTNIANVGANSHITDHQFVGLENPHALPSGQVLHNNAMRIERKRKSDDARTTKEVEAHEMRIRKELEKQDNLRRKNEERMRKEMERQDRERKKEEERLMRERQREEERTKREQKRELERREKFLLKENLKAEKMRQKEELRKEREAERRKAALEKATARRMAKESMELIDDEQLEMMELAASSKGLSSIVHLDFETLQNLESFRDSLCFFPPESVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLRVIIKDIEGVARTPCTGLGMNQNGAAISGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEILRQLALSAGYGPQLKKRSVAWSCANDKDEGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGNTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRAAFRKDPAXAESILSEARKKIQIFENGFLVGEDADDVEREESESDEVDEDPEVDDTVNPSSVNITSEQCDDLSSNGKENLGNDVALKDEFDKGLPCFSENGSKNADCPSSVIGQPVACEDLNAGNLGEDNVEIDESKSGESWVQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALRKQMSAEAQIDKICLKDDNFIKSDFLPINGNKIETQYPCASVEGNQSPLLDINVCNNNNEASPSTTENKKPAPVAQSLSIEKPSSVQDLCPGPDNXQTLLSAQCSKKLRSQLKTYISHIAEEMYVYRSVPLGQDRRHNRYWQFVASASCSDPGSGRIFVEYHDGKWRLIDSEEAFDALLNSLDSRGTRESHLRLILQKIENSFKENVRKNTESAKIGNNDETCVKNEVDETDPSPDHHTGSDSPSSTLCGLNSDTSETSSSFRIELGKSESDKKAALRRYQDFQKWIWKECYNSSILRAMKYGKKRCKSQVDMCDICLNPYFFEDSHCSYCHRTFSSNDGFNFSKHAFQCGDKLPKDICILDSSLPLRTRLLKSLLAFIEVSVPPEAFQSIWTEDVRRHWGVKLSKSSSVEELLQILTLFERALKRDFLSSPFSTTGELLGMSAMLESVAHTSMDLEPVSVLPWVPWTTSAVSLRLFEFDASILYVQLEKPEPREEKEAREYIKPPSRYSLVKSTKVVEPADLYHDEFMKVKSAPMKIVRSSNKRGRVSRGKGRIKKLSKRMNYSKRDTGHRNVKVTENLSQRIKQQGQGSHGQAGGHGRRTVRKRRVEKRAVEDLLLGHRAATHSSNIGREPLRILDEDWNDEKASPMTPIQTGAADIGDSTEEVESDDNAQAVESDDNVQAVESDDNVQAVEYGQGNWEIGFNGTPNRWSRDMVGMSDEDVEASEDDNDNGIEENEEEEDSEADVMSEGSDGMANRVVSEESSDSAVSEDSSD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00552	53044	63417	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000552s00024339.1	PF00046.24	Homeobox	49	104	1.10E-15
Glyur000552s00024339.1	PF02791.12	DDT	563	621	1.10E-25
Glyur000552s00024339.1	PF05066.8	HARE-HTH	745	813	6.10E-11
Glyur000552s00024339.1	PF15612.1	WHIM1	952	997	8.50E-05
Glyur000552s00024339.1	PF15613.1	WHIM2	1129	1165	1.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.572
SRR1783600	control	20.708
SRR1783602	moderate drought stress	21.458
SRR1811619	moderate drought stress	21.228

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.181
DRR006520	Root Summer glycyrrhizin high producing strain	18.075
DRR006521	Root Winter glycyrrhizin high producing strain	12.605
DRR006522	Root Winter glycyrrhizin high producing strain	12.132
DRR006523	Root Summer glycyrrhizin low producing strain	22.239
DRR006524	Root Summer glycyrrhizin low producing strain	22.042
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.969
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.956

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.495
SRR2868004	Drought Stress (root)	45.241
SRR2967015	Control (root)	47.964

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.872
SRR9715740	Leaf	26.625
SRR9715741	Leaf	26.371
SRR9715739	Root	2.584
SRR9715742	Root	26.202
SRR9715743	Root	22.257

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.376
SRR8749028	MeJA induced 9h	23.241
SRR8749029	MeJA induced 9h	11.771
SRR8749030	Uninduced	20.242
SRR8749031	Uninduced	17.983
SRR8749032	Uninduced	10.995

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.066
SRR8400027	Control - Root	34.471