Gene detail

Gene detail information of Glyur000552s00024334

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31940.1	3.00E-37	cytochrome P450, family 82, subfamily C, polypeptide 4
NR	KEH30996.1	4.35E-93	cytochrome P450 family protein [Medicago truncatula]
COG	YP_004303682.1	5.00E-20	cytochrome P450 [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|O49858\|C82A3_SOYBN	2.00E-58	Cytochrome P450 82A3
trEMBL	tr\|A0A072UNP8\|A0A072UNP8_MEDTR	2.00E-93	Cytochrome P450 family protein {ECO:0000313\|EMBL:KEH30996.1}

Sequence

Transcript Sequence

>Glyur000552s00024334.1
ACTGGAGTGGAGACCCTTGTAATTCAGAAAACCTGCAGGTCGCAGCCAGCTCGCAGCGCCCCTACACTAATTATAGCTGGTTCAGACACTACAACAACGACATTGACTTGGGCTATTTCTTTACTTCTTAACAAACGCGAAGTCCTGAACAAAGCCATACGTGAATTAGACACACGACTTGGTAGGGAAAAGATGGCGATGGAATCAGATTTGGCANAGTTGGAATATCTCCAAGCCATCATTAAGGAAACATTACGCTTGTATCCAGCCTCGCCACTCAATCTACCTCACGNGTCCATAGANGANTGCACTATTGNTGGATACCACGTCCCTGCTGGCACGCGTCTCTTGACTAACATTTCAAAACTTCAACGAGATCCCTTGCTATATTCTAATCCTTTGGAGTTTCACCCAGAGAGATTCCTCACAACACACAAGGATGTCGGTAGAAGAATGTGTCCTGGACTCTCATTTGGTCTTCAACTAATGCAAATGACACTTGCTACATTGCTCCAAAGTTTTGACATAGCAACTCCAGATGGGGGATCGGTCGATATGGNTGAACAAAGCGGGCTAACCAACACCAAAGCGTCTCCACTCCAAGTCATTCTCACACCACGTCTATATACCCAAGCTTATGGGCAGGCTGTTATTACAGAAAAATGTGGGGCACATAACTTTAATGTTGGTGAAGATGGTGGCTTTGCTCCTAATTTCCCTTGGTTCAATGGCTTGATCTTGATCCTTCCGCCTCATGGTGATCTTTTAATTGTACCTGGGAGTCTCAACAAGTTTGGAGTACTTGGTAGAGTTTATCAGCTTGGTATCTTCAAGAAAAACACTTCTATCAAGCATCATAGGCACATGAAACCCCTACTCATTTTGTTGTTACTGTGTCAGAGGACTCCATCAAAACTGTTGAACCCTAAATCTACCTCCACCGTGCACAGCCACCAACCGCCCGCGACTCAGAACCGAGATCCTCCCTCGGCTAATGTGAACGGCGGCACGGCTCCGGCGACTACAAATGGCGGCCACTCCTCTGGCGCTCCTCCATTTGTTGGTAGTATTACCTTTACATTTGTTGGAAGAAATAATAGAGACTGGAGTGGAGACCCTTGTAATCAGAAAACCTGCAGGTCGCAGCCAGCTCGCAGCGCCCCTGTTTCTAAAATCTATATAGCAAGAAGCCCATATCACACAGCGCTGGAATTTCCAAGCAATGGATTTGAACGATATCCAGCTTCCATTTACCATCATCTATGGCACGTTACACTAATTTTAGCTGGTACAGACACTACAACTAGGACATTGACTTGGGCACTTTCTTTACTTCTTAACAAACGCGAAGTCCTGAACAAAGCCATACATGAATTAGACACACGACTTGGTAGGGAAAAGATGGCGATGGAATCAGATTTGGCAGAGTTGGAATATCTCCAAGCCATCATTAAGGAAACATTACGCTTGTATCCAGCCTCGCCACTCAATCTACCTCACGAGTCCATAGAAGATTGCACTATTGGTGGATACCACGTCCCTGCTGGCACGCGTCTCTTGACTAACATTTCAAAACTTCAACGAGATCCCTTGCTATATTCTAATCCTTTGGAGTTTCGCCCAGAGAGATTCCTCACAACACACAAGGATGTCAGTGTCAAGGGCAACATTTTGAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00552	23141	35244	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP82C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000552s00024334.1	PF00067.17	p450	20	194	5.80E-48
Glyur000552s00024334.1	PF00067.17	p450	424	549	2.20E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.676
SRR1783600	control	1.674
SRR1783602	moderate drought stress	2.173
SRR1811619	moderate drought stress	2.100

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.636
DRR006520	Root Summer glycyrrhizin high producing strain	0.538
DRR006521	Root Winter glycyrrhizin high producing strain	3.940
DRR006522	Root Winter glycyrrhizin high producing strain	3.495
DRR006523	Root Summer glycyrrhizin low producing strain	0.692
DRR006524	Root Summer glycyrrhizin low producing strain	0.519
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.796
SRR2868004	Drought Stress (root)	16.644
SRR2967015	Control (root)	16.921

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.810
SRR9715740	Leaf	3.137
SRR9715741	Leaf	9.513
SRR9715739	Root	0.944
SRR9715742	Root	1.237
SRR9715743	Root	1.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.151
SRR8749028	MeJA induced 9h	36.158
SRR8749029	MeJA induced 9h	58.350
SRR8749030	Uninduced	118.191
SRR8749031	Uninduced	158.731
SRR8749032	Uninduced	182.327

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.100
SRR8400027	Control - Root	3.251