Gene detail information of Glyur000551s00023185 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31770.1 | 6.00E-101 | ATP-binding cassette 14 |
| NR | KDO74147.1 | 2.20E-158 | hypothetical protein CISIN_1g010509mg [Citrus sinensis] |
| COG | YP_004054080.1 | 2.00E-37 | ABC transporter [Marivirga tractuosa DSM 4126] |
| Swissprot | tr|Q9C6W5|AB14G_ARATH | 5.00E-127 | ABC transporter G family member 14 |
| trEMBL | tr|A0A067GFE4|A0A067GFE4_CITSI | 8.00E-159 | Uncharacterized protein {ECO:0000313|EMBL:KDO74147.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00551 | 139465 | 144182 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000551s00023185.1 | PF00005.22 | ABC_tran | 71 | 216 | 2.00E-24 |
| Glyur000551s00023185.1 | PF01061.19 | ABC2_membrane | 291 | 452 | 3.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.531 |
| SRR1783600 | control | 4.503 |
| SRR1783602 | moderate drought stress | 4.785 |
| SRR1811619 | moderate drought stress | 4.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.947 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.578 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.696 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.931 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.021 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.563 |
| SRR2868004 | Drought Stress (root) | 4.339 |
| SRR2967015 | Control (root) | 5.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.052 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.609 |
| SRR9715742 | Root | 1.057 |
| SRR9715743 | Root | 1.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.412 |
| SRR8400027 | Control - Root | 0.744 |