Gene detail

Gene detail information of Glyur000551s00023179

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G65930.1	kinesin-like calmodulin-binding protein (ZWICHEL)
NR	AET03514.2	kinesin-like calmodulin-binding protein [Medicago truncatula]
Swissprot	tr\|Q9FHN8\|KCBP_ARATH	Kinesin-like calmodulin-binding protein
trEMBL	tr\|G7L7W2\|G7L7W2_MEDTR	Kinesin-like calmodulin-binding protein {ECO:0000313\|EMBL:AET03514.2}

Sequence

Transcript Sequence

>Glyur000551s00023179.1
ATGGATGTTGTTGTTGGTGCTGCAGTGCCCGGTCAGTGCTGGCAACACTCTTCAGCTGGAAAAGTCATGACTCATCACTCTCTGAACGAATCTTTGGAAGGGCAAAAGGAGCACAAAAATGGAACTGTGGAAGAACTTGAAGGGCATAGCACGGCAAAATTTGATGATGTAAGTAATATGACCATTGATATGCTCCCATCCATGGCTCAAAATTCTAGGACAAGCAGATCTTCCTTTAGCTCTAGCAATGGCAATGAGGACGCCCCTGTGAACAGCTGTACTGCTGTTAGCAATGCTGATGGCTATGATAGTGATAGCTCCAATTTTGCACCACCCACACCATCAACTCTGTCAATGGCTGTTCCAGCAGAACTNGCTGGAGCTGTACCCTTGATCGACAGATTCCAAGTGGATGGATTTTTAAAATTAATGCATAAGCAAATTCAATCTGCTGGGAAACGTGGATTTTTTTATAGAAGATCTATAGATCCCCAGCCGCGAGAAAAATTTACATTTGAGGACATGCTCTCTTTTCAAAAGGATCCAATACCAACGGCATTGCTTAAGATAAATAGCGATTTAGTAAGTCGGGCAACAAAATTGTTCCAGATAATTTTGAAATATATGGGAGTTGATTCATCTGAGTGTGTAGCTCCATTAAGCTTAGATGAACGAGTTGATCTCATAGGGAAACTATACAAGCAAAGTTTGAAACGTTCAGAACTCCGAGATGAACTTTTTGTTCAGATATCAAAACAAACAAGAAATAACCCTGAGAGGCAATACTTGATCAAAGCATGGGAGCTTATGTATTTATGTGCATCCTCCATGTCTCCTAGTAAAGACATTGGGGGTTATCTGTCAGAATATGTTCATAACATAGCACATGGTGTGGCTACCGATCCTGAGATNCAAGCCCTTGCATTAAATACATTAAATGCTTTGAAGCGTTCTGTCAAGGCTGGTACCAGACATATAATACCTGGGCGAGAGGAGATTGAAGCTTTGTTGACCGGGAGAAAGCTTACAACTATAGTGTTCTTCCTTGATGAAACGTTTGAAGAAATTACATATGACATGTCAACAACAGTTGCTGATGCTGAACTTGCAGGGCTCATCAAACTTTCAACATACTCTAGCTTTAGTCTGTTTGAATGTCGTAAAGTTGTTACCGGTTCCAAATCACCCGATCCTGGAAATGGCACGTCTTTTTCCTCTCTTTCATTGTTATATGAGGAGTACATTGGGTTAGATGATAACAAATATATTGGGGATCTCCTGGCGGAATTTAAAGCTGCGAAAGATAGAAGTAAGGGAGAAATCTTGCACTGTAAACTGATATTCAAGAAAAAGTTATTTCGNGAGTCAGATGAAGCTGTGACAGATCCAATGTTTGTGCAGTTGTCCTATGTACAATTGCAACATGATTATATTTTGGGTAATTATCCTATTGGAAGAGATGATGCTGCTCAGCTTTCTGCATTACAAATCTTGACTGAGATTGGATTTGTTAGCTCACCTGAATCATGCACTAACTGGAATTCACTTCTGGAGCGATTCCTTCCTAGACAAATTTCAATGACACGAGCGAAACGTGAATGGGAGTTTGATATTCTTTCTCGATATCATTCATTGGTGCATCTGACAAAAGATGATGCAAGACAACAATTTCTGCGTTTATTGAGAGCACTTCCTTATGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCTATTGGACTCTTGCCTGGACGAATAATATTGGGAATAAATAAAAGAGGGATTCATTTTTTTCGTCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTTGGAAGCAGCAATACAGCAGTCTTTTTTAAAATGCGAGTAGCAGGTGTTCTTCACATATTCCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATAGCTCTTCAGACACATATAAATGATGTAATGCTGCNCCGCTATTCAAAAGCACGATCTGCTAGTGGTGGTGGTGGTTCTTTGAATGGAGATATTTCTAATAATTTTAAGCCACCTAATTTTGAATTATATGAGAAGCGTATTCAAGATTTATCAAAACTTGTTGAAGAATCTCAAAGAAATGCTGATCAATTGCAAAAAGAATTGCGTGAGAAGCAAGAAGAAGAAGAGCANATGCAAGAAGAATTGGAGGGCTTGAAGGAATCCTTAAAAGCTGATAAGCAAAATCTCGAGGCAGTTACAAGTGACTGTGTTAGGCTTAGGTCATTATGCAATGAAAAGGATGAGGCACTACAGGATGCAATTCTACAGAAAAGGAATATGGAAGCAAGAATGGCCAAGTTGAGTAATATGGTGATAGAGAACACAGCCAAACAGGATCTTGTTGAAACAAATAACCAAGTATTCCAAAAGCTTAAATATGAGCTAAAACATTGTAAAGATGAGCTGCATGCAGCCGAAGNAACTATCAAAACTTTGAGAAGTGAAAAAATGTTTTTGGAACAGAAGCTATCTGCGCTTGAGAAGAGGAATGCTGAAGAGAGTAGCACTCTTCAACGGAAACTTGAGCAAGAACGCAGAGCTGTGAAGTCTGAAGTGTATGACCTTGAAAGAAAGCTAGAAGGGTGTAGACAAGAATTAATNGCTGCTAAGTCTACTATTTCAGTCAAGGACAATGAGTTGGCTGCATTGCAGAATAATTTGAAGGAACTGGAAGAATTGCGAGAAATGAAAGAGGACATTGATAGAAAGAATGAACAGACAGCTTCCATATTGAAGATGCAAGGGGCTCAACTAGCTGAAATGGAAGCTCTGTATAAGGAAGAACAGGTTTTAAGGAAACGTTATTTTAATATAATCGAAGACATGAAAGGCAAGATCAGAGTTTATTGTCGGCTAAGACCTCTTGTTGAAAAAGAGGTTGCTGAGAAAGAAAGGAAAGCTCTTATTGCAGTAGATGAGTTTACTGTTGAATTTCAATGGAAAGATGATAAGCCAAAGCAGTATATATATGATCGTGTTTTTGGCGGTGATTCAACTCAAGAAAGCTATTTGGTGCAATCTGCGGTAGATGGTTATAATGTCTGCATATTTGCTTACGGTCAAACCGGCTCCGGAAAGACATTTACAATCTATGGATGTGAAGACAACCCTGGGCTTACCCCGCGTGCAATTGCTGAACTTTTTAGAATTTTAAGGAGAGATAGTAACAAGTATTCCTTTTCCTTGAAGGCATACATGGTGGAATTATACCAAGATACCCTCATAGATCTTCTGTTACCCAAGAATGCAAAGCATCAGAAGTTGGATATCAAGAAGGATTCCACGGGAATGGTGGTTGTGGAAAATGTGACAGTTATGCCAGTTTCTACAATTGAAGANTTGAATAACATAATTCAAAAGGGATCCGAACGGCGACATATATCAGGGACCCAAATGAATGAAGAAAGTTCAAGATCTCATCTCATTGTTTCCATAGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAGGGGAAAGCTGAGTTTCGTGGATCTAGCTGGCTCAGAAAGAGTGAAGAAGTCAGGTTCTAGGGGNAGTCAACTCAAGGAAGCACAGAGTATCAACAAATCATTGTCAGCACTTGGAGATGTTATAAGTGCTTTGTCTTCTGGTGGTCAACACACGCCTTATAGGAATCACAAGTTAACTATGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTCCATTGTGAATGACCCTAGCAAAAATGTTACTTCAAAAGAAATAGCAAGGTTGAAGAAGTTGGTTGCTTATTGGAAACAGCAAGCTGGTAGAGTAGGAGTTGAGAATGAAGATTTAGAAGAGATTAAAGAAGAAAGACCAACTAAAGAGAGGGGGGTCTAG

Protein Sequence

>Glyur000551s00023179.1
MDVVVGAAVPGQCWQHSSAGKVMTHHSLNESLEGQKEHKNGTVEELEGHSTAKFDDVSNMTIDMLPSMAQNSRTSRSSFSSSNGNEDAPVNSCTAVSNADGYDSDSSNFAPPTPSTLSMAVPAELAGAVPLIDRFQVDGFLKLMHKQIQSAGKRGFFYRRSIDPQPREKFTFEDMLSFQKDPIPTALLKINSDLVSRATKLFQIILKYMGVDSSECVAPLSLDERVDLIGKLYKQSLKRSELRDELFVQISKQTRNNPERQYLIKAWELMYLCASSMSPSKDIGGYLSEYVHNIAHGVATDPEXQALALNTLNALKRSVKAGTRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMSTTVADAELAGLIKLSTYSSFSLFECRKVVTGSKSPDPGNGTSFSSLSLLYEEYIGLDDNKYIGDLLAEFKAAKDRSKGEILHCKLIFKKKLFRESDEAVTDPMFVQLSYVQLQHDYILGNYPIGRDDAAQLSALQILTEIGFVSSPESCTNWNSLLERFLPRQISMTRAKREWEFDILSRYHSLVHLTKDDARQQFLRLLRALPYGNSVFFNVRKIDDPIGLLPGRIILGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLXRYSKARSASGGGGSLNGDISNNFKPPNFELYEKRIQDLSKLVEESQRNADQLQKELREKQEEEEXMQEELEGLKESLKADKQNLEAVTSDCVRLRSLCNEKDEALQDAILQKRNMEARMAKLSNMVIENTAKQDLVETNNQVFQKLKYELKHCKDELHAAEXTIKTLRSEKMFLEQKLSALEKRNAEESSTLQRKLEQERRAVKSEVYDLERKLEGCRQELXAAKSTISVKDNELAALQNNLKELEELREMKEDIDRKNEQTASILKMQGAQLAEMEALYKEEQVLRKRYFNIIEDMKGKIRVYCRLRPLVEKEVAEKERKALIAVDEFTVEFQWKDDKPKQYIYDRVFGGDSTQESYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGCEDNPGLTPRAIAELFRILRRDSNKYSFSLKAYMVELYQDTLIDLLLPKNAKHQKLDIKKDSTGMVVVENVTVMPVSTIEXLNNIIQKGSERRHISGTQMNEESSRSHLIVSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSRGSQLKEAQSINKSLSALGDVISALSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMSIVNDPSKNVTSKEIARLKKLVAYWKQQAGRVGVENEDLEEIKEERPTKERGV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00551	75726	87105	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007018 microtubule-based movement

GO:0055114 oxidation-reduction process

cellular_component

GO:0005856 cytoskeleton

GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0003824 catalytic activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000551s00023179.1	PF00784.12	MyTH4	224	336	4.70E-36
Glyur000551s00023179.1	PF09379.5	FERM_N	346	453	1.50E-05
Glyur000551s00023179.1	PF00373.13	FERM_M	460	571	4.80E-12
Glyur000551s00023179.1	PF00225.18	Kinesin	969	1263	1.10E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.597
SRR1783600	control	7.403
SRR1783602	moderate drought stress	5.023
SRR1811619	moderate drought stress	5.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.568
DRR006520	Root Summer glycyrrhizin high producing strain	13.430
DRR006521	Root Winter glycyrrhizin high producing strain	1.728
DRR006522	Root Winter glycyrrhizin high producing strain	1.638
DRR006523	Root Summer glycyrrhizin low producing strain	7.869
DRR006524	Root Summer glycyrrhizin low producing strain	7.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.881
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.533

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.000
SRR2868004	Drought Stress (root)	7.443
SRR2967015	Control (root)	7.670

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.203
SRR9715740	Leaf	1.861
SRR9715741	Leaf	2.781
SRR9715739	Root	0.467
SRR9715742	Root	7.480
SRR9715743	Root	6.918

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.706
SRR8749028	MeJA induced 9h	6.165
SRR8749029	MeJA induced 9h	3.597
SRR8749030	Uninduced	0.493
SRR8749031	Uninduced	0.236
SRR8749032	Uninduced	0.322

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.392
SRR8400027	Control - Root	25.609