Gene detail

Gene detail information of Glyur000551s00023172

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76520.2	2.00E-106	Auxin efflux carrier family protein
NR	AET03524.2	0	auxin efflux carrier family protein [Medicago truncatula]
trEMBL	tr\|G7L7X2\|G7L7X2_MEDTR	0	Auxin efflux carrier family protein {ECO:0000313\|EMBL:AET03524.2}

Sequence

Transcript Sequence

>Glyur000551s00023172.1
CTTCTTTTTTCAATAAATATTTTCCCATGTTAGATTCTCCATAACTACATTCCTTTTTCTTTTCCCCTCATTTTTTTTTTCTCTTTGCTACGCTACGTCGATGCTCCTTTATGCGGCAGTGTTACAGCGTTGTTTCTCATGACCGGCAGCAGCAACCAAACCATTGCCACTTTTCTCTTCGCCCTCTCCTCTCTATAACGATAGACGAATCTCCGAAGTCCGAAGTAGTATTTTATACGCGTGAATTCTAGGCTACATATATTATAATAACAAGGCCACCACGGATTATTAGCAGCATTCGTTGGTTTGAAGATTTGTTGTGAGAATGGGGTTTCTACAGCTCTTGTATGTTGCTTCATTCCCTGTGATAAAAGTGTTACTGATTACTGCACTTGGCTTGTTTCTTGCAATGGATCACGTTGATGTTTTGGGAGCAGATGCAAGGAAGAGAGTGAATAATCTTGTGTTTTATGTGTTTAATCCATCACTGGTGGGTAGCAATTTGGCAGAAACCATAACCTCTGAGAATGTTCTTTCGTTGTGGTTCATGCCAGTAAATATTCTTGGCACATTCATATTAGGCTCGGCTTTGGCATGGATTTTGATTAGGATCACAAGGCCTCCCAAGCACTTGGAAGGTCTAATATTGGGTTGCTGCTCTGCAGGAAATTTGGGAAACTTGCCTATAATCATTATTCCGGCTATATGTAAAGAGAAAGGCAGTCCTTTTGGAGATCCTGATCTCTGCTATAAATATGGGATGGCTTATGTTTCACTTTCTATGGCGATTGGAGCAGTTTTACTATGGACATATGTTTACAATATAATGAGGATTTCCTCAAGTAGAGCTCACAAAGANGGTTATACAAGGAATGATGACCCCAGCACATTGAAGGCTTCAGGGGAGACNCCAGAATCACGGCAAGACAATATTTCAGAAACACTTGACACTGCTAAAGATGCCCTGGATGATGATGCATATACCCTATTGCTTCCTAACACAGAATCTGAGGAAAAAGTTCCAATCTCAGAAAAAATCAAGTGCCGGTTGAGGAAGATTTCTAACAANCTCAATTTGCAAACCATTTTTGCGCCATCAACCATTGGAGCAATTGTTGGCTTTGCCATTGGCTTGAAGGGAACAAGTACTCCAGTGTGGACCATTGTGGGGATTGTAGCAGTCCGCTATATTTTGCTACCACTGTTGGGTGTTGTAGTTGTTAAAGGAGCAATAAAATTGGGTTTGGTGCAATCAGATCCCTTGTATCAGTTCGTGCTTCTACTTCAATATGCAGTTCCACCAGCAATGAACATAGGAACTATGGCTCAATTGTTTGGATCTGGTGAAAGTGAATGCTCTGTTATCATGCTTTGGTCATATGCTTTGGCGTCAATTGCAGTTACCCTTTGGTCTACCTACTTCATGTGGCTAGTTGCTTGATTATTTACTCAATGACATGGTTATTATTATTTTTTTTATATAGGGGACATGTTATTATTTGATTATTAATAATATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00551	31350	36719	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000551s00023172.1	PF03547.13	Mem_trans	13	274	2.90E-41
Glyur000551s00023172.1	PF03547.13	Mem_trans	283	362	1.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.314
SRR1783600	control	0.220
SRR1783602	moderate drought stress	0.259
SRR1811619	moderate drought stress	0.218

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.272
DRR006520	Root Summer glycyrrhizin high producing strain	0.202
DRR006521	Root Winter glycyrrhizin high producing strain	1.140
DRR006522	Root Winter glycyrrhizin high producing strain	1.015
DRR006523	Root Summer glycyrrhizin low producing strain	0.473
DRR006524	Root Summer glycyrrhizin low producing strain	0.349
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.277
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.027

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.083
SRR2868004	Drought Stress (root)	5.516
SRR2967015	Control (root)	3.926

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.703
SRR9715740	Leaf	7.433
SRR9715741	Leaf	6.442
SRR9715739	Root	0.382
SRR9715742	Root	0.812
SRR9715743	Root	1.029

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.904
SRR8749028	MeJA induced 9h	1.410
SRR8749029	MeJA induced 9h	1.111
SRR8749030	Uninduced	54.782
SRR8749031	Uninduced	53.608
SRR8749032	Uninduced	31.535

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.147
SRR8400027	Control - Root	1.211