Gene detail

Gene detail information of Glyur000550s00021756.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32700.1	9.00E-54	PLATZ transcription factor family protein
NR	XP_003535238.1	2.68E-128	PREDICTED: uncharacterized protein LOC100809455 [Glycine max]
Swissprot	tr\|P0CB19\|Y3081_ARATH	2.00E-06	Uncharacterized protein At3g50808
trEMBL	tr\|I1L944\|I1L944_SOYBN	1.00E-130	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G07240.1}

Sequence

Transcript Sequence

>Glyur000550s00021756.1
ATGGGATTTGAGCAGGACACAGTGTTGGTGCCTCCTTGGCTTGAACCACTTCTACGCACGCCTTTCTTCAACGATTGTCGGGTTCACGCCGACGCCGCCAGGAATGAGTGTAACATGTATTGCCTAGATTGCAGTGGCGATGCATTTTGTTTCTATTGCCGTTCTTCAAGACACAAAGATCACCAAGTCATTCAGATAAGACGATCTTCATATCACGATGTAGTGAGGGTGTCAGAGATTCAGAAGGTGTTGGACATAAGTGGAGTACAGACATATGTGATCAACAGTGCCAGAGTTTTGTTCCTGAATGTGAGGCCTCTGCAGCCAAAATCTGGGAAAGGGGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGGTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATGCAAGCTTTGTTTTGGACGGTAAGAATGAGGCATTGACAATGGAGGGGGTGTCTTCAAGGAGATCAGTCTCATCTAGACAGCAACAAGAAGAAGAATTGCGTGAAGGCTCAACACAAGANATGTATCCCGCCACGCCACCTCCACCTCCTTCAAATGCAAGGAGAAGAAAAGGCATTCCTCATAGGGCTCCTTTTGGCTCCTAATTAAGTAATTCNAATGGATTCCTTCTACCCTCAAAATTGGTACATATTCAATATTCAGCCTCGATCGGCAGCATATATTTTTTATTTTACTTGGAATACAACCCTCTTTGGTGGGATATACCTCNTTATTATAATTTTTTCTCAATAAAAAAGAAAAAAGAATAGGAGCCTTTGGAGGGGGGGTTTGCCCAAGGTCCATGATGTGGAAAAAGAAAGGAAATTGGGTATATAGGAAAGCTCCTTCTTTTCCGGTTTGGGTCCCAAAAANATATATACAAATTCCCCCTTGTGTAAGAACCAATAATGCATTTGTCAAAAAAAAAAAGAACCAATAATGCAGATTTGTTTAATATTTAATTTAATAGACATGTCATTAAGAAATAAAAAAGCAAGTCTTTGTGGAGTCCGTTCTATAGTTTTCGATGGCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00550	95932	97660	-

Gene family

Gene family	subfamily
Transcription Factors Family	PLATZ

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000550s00021756.1	PF04640.9	PLATZ	67	139	4.80E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.003
SRR1783600	control	1.964
SRR1783602	moderate drought stress	0.824
SRR1811619	moderate drought stress	0.833

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.487
DRR006520	Root Summer glycyrrhizin high producing strain	3.403
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.935
DRR006524	Root Summer glycyrrhizin low producing strain	3.693
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.469

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.664
SRR2868004	Drought Stress (root)	6.592
SRR2967015	Control (root)	6.151

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.730
SRR9715740	Leaf	0.175
SRR9715741	Leaf	0.551
SRR9715739	Root	1.163
SRR9715742	Root	1.328
SRR9715743	Root	1.439

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.187
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.013
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.106

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.682
SRR8400027	Control - Root	12.691