Gene detail

Gene detail information of Glyur000550s00021754

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36690.1	8.00E-134	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	NP_001241598.1	0	uncharacterized protein LOC100778488 [Glycine max]
COG	YP_004572412.1	9.00E-33	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|D4N501\|DIOX2_PAPSO	5.00E-60	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
trEMBL	tr\|C6TG61\|C6TG61_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G37210.1}

Sequence

Transcript Sequence

>Glyur000550s00021754.1
ATGTCTCCTGCAATGGCAACAAATTATGATCAGAGGAGTGAGGATGATACAGCAGAAAGTCAATATCAGAAAGGAGTGAAGCACCTGTATGAGAAAGGTTATCTTCAAAGGGTACCGAAGAAGTTTATCCTTCCAGCTTCCGACAGACCCACCACGAGTACTATGGATGATCCAAATGTTACAAAGCAAAACCTTCAGCTACCCATCATTGATTTTGCCGATTTGCTTGGTCCAAATAGGCCCCAAGCCCTTCACTCCCTAGCCAATGCTTGTGAAAAGTATGGATTTTTCCAGCTGGTAAATCACAGCATCTCAGAGGATATAATGAGGAGCATGATAGAAGTGATAGGGAGGTTCTTCGATCTCCCATTCGAGGAGAGAGCTAAGTACATGACAACTGATATGAGAGCAGCGGTGCGGTATGGGACCAGCTTCACCCAAACCAAAGACACAGTGTTCTGTTGGAGGGATTTCTTGAAACTCCTCTGCAGCCATCCCTTGCCTGATTTCCTACCCCATTGGCCTGCTTCCCCTGTGGACTTTCGGGAAGTGGTGGCCACCTATGCAGAAGAAACAAAACACTTGTTCTTGGCGGTAACGGAAGCCATCTTAGAAAGTTTAGGAATTATGGAAGCCAACCAAGAAGAGAAGACGGATGAAAAGGACAAGAACGACGACATTATGAAAGAATTGGAGAATGGGAGCCAGATGTTGGTGGCCAATTTCTACCCACCATGCCCCGAACCAGACCTAACCCTGGGGATGCACCCTCACTCCGATTATGGCTTCCTCACACTTCTCCTCCAAGACGAGGTCGAGGGTTTGCAGATCCAATTCCAAGGCAAATGGGTCACTGTTCAACCTATCCCCAACGCCTTCGTTGTCAATATTGGTGACCATTTAGAGATCTATAGCAACGGAAAATACAAGAGTGTCTTACACAGGGCATTGGTGAATGAAGCTAAGATCAGAGTATCGGTGGCATCGCTGCATAGCCTTCCCTTTAACTGCACGGTGAGACCGTCGCCAAAACTCGTTGACGAAGCGAATCCCAAGCGTTACATGGACACAGATTTTGATAGCTTTCTAGCGTACGTGTCGACCAGAGAGACCAAGAAAAAGGATTTCCTGNAGACCAGGAGATTGATACACACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00550	83982	86246	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000550s00021754.1	PF14226.1	DIOX_N	67	168	1.00E-22
Glyur000550s00021754.1	PF03171.15	2OG-FeII_Oxy	236	330	3.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.601
SRR1783600	control	7.182
SRR1783602	moderate drought stress	3.554
SRR1811619	moderate drought stress	3.640

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.634
DRR006520	Root Summer glycyrrhizin high producing strain	0.386
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.017
DRR006524	Root Summer glycyrrhizin low producing strain	0.951
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.092
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.964

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.967
SRR2868004	Drought Stress (root)	45.333
SRR2967015	Control (root)	32.470

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.531
SRR9715740	Leaf	8.575
SRR9715741	Leaf	21.121
SRR9715739	Root	1.579
SRR9715742	Root	1.939
SRR9715743	Root	1.898

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.617
SRR8749028	MeJA induced 9h	25.539
SRR8749029	MeJA induced 9h	45.373
SRR8749030	Uninduced	161.744
SRR8749031	Uninduced	950.061
SRR8749032	Uninduced	600.718

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.920
SRR8400027	Control - Root	12.464