Gene detail

Gene detail information of Glyur000549s00029265.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29940.1	2.00E-130	pathogenesis related homeodomain protein A
NR	XP_004487993.1	0	PREDICTED: pathogenesis-related homeodomain protein-like [Cicer arietinum]
Swissprot	tr\|P48785\|PRH_ARATH	4.00E-155	Pathogenesis-related homeodomain protein
trEMBL	tr\|K7MBU3\|K7MBU3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G17956.3}

Sequence

Transcript Sequence

>Glyur000549s00029265.1
ATGCGGGATACCGAAAAGTTAAGTAACAGAGGATCTACAAAATCCAGTAACTCAAAGGAACATACCGAGTCAAAAGTAGATTCATCGGGATGCAAAACAGGTAGCACAAAATGCCAAGGGAAGAAACAAAAACTGAAATCAAAATCTCATAAACTCAGAGGTTGCACAAATGCATCGGGGAGGACAGTTACTGATTCTTCCATCAAGGNGCCAATCAAGGATTCTTCAAATAAAAAATTGATTATTAGACAAAATCTGCATAAAACTGATAGGAATTCTTCACAGATGCGGTCTTCAAAAAAGATGCAAGGAGGAAAATTTTCTCTAAATTCTAGAAAAGAGGAGAAAGATGTTAATGGGGAGGCGGAGATTAAAAAACGTATGAGAAGGAGAAAGAAGAAAAGACNAAGGGATAATGTGGATCTTGATGATGCTTCACGCCTCTTGAGAAGAACNAGGTATCTCTTGATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCCGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGTAAAGGAGCTACAAAGAGCAAAGAAGCAGATTTTAAAATGCAAACTTAGTATCCGTGATGCCATTCGCCAGCTGGATTCTCTTAGTTCAGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATCTTCTGTGCAAATTGCAAGTTGCGCGAAGCTTTCCCGGATAATGACATTATACTCTGTGATGGCACGTGCAATCGCGCTTTTCATCAGAGATGTCTTGATCCTCCATTGGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGCACTCAAATCTCATTGTCCAGCACTTGGCAGGATGTGTTCAAGGAAGAGGCTGATATACCTGATGGCAATACTGCAATACTAAATCCAGAAGAAGAATGGCCATCTGATGATCCTGAAGATGGCGACTATAATCCAGAGAGGAAAGAAGACAGCCACGGCATTAACACAGAGGGAAATGATGATAACGCATCTGATGATTTAAGTAGTTCTTCCAGTGTGTGGTCTTTGAATGGGGAATGTTCTCCATTAGATGAAGGCATTGNCCTTGAATATTATTCTGTTAATGCCTGCATAGATTCTGATGAATCCGGGGAAATAGCGTGTGGTCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGGAAGGATGCTCCTCCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGCCAGTACTCTAATGACTCTGCATGAAAGTGAGAATAAGCATCGCAATAACGAGAACAATGATAGAATAAAAAGGTCTTTTTTCAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAACTTCCTCCAAGATCCGTGAGGGAAGAGCTTTCTAAAGAGTTGGGACTTGATGCTGCGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTCAGCACTTAAAATGAGAAAGTATCAAGCAGAAGGGGGACAACAGCTTCAGGGTTTCACTTCTAAGACCTCAAAGGATTCTAGGTCACAAAATGCTCAGAAAGATGAGCTTTTGAAATCAAAGGTCTCAAAAATTACCATGATTCATTCCCAGAAAAATGATGAAAATGTCACTGGGAAAGAGAAAATAAAGTCATCTAGCAGTCCGTTGAAGAAAAGGCGACCGGAAATACCTCTACCCTTGAGAGAAAACGGAGACTCAGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGATTAAACTGGATAGTATAAAGCAAAAATTAACTCAAGTTAAAAATTACAGAGCAAAGGGTTCTTCAGATAAATTCTATTCCAACGAGCCATCTGTTATATATGTACCCATAGCTGAGTTAAAGGAAAAAGTTGTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00549	111343	116333	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000549s00029265.1	PF00628.24	PHD	235	290	1.80E-10
Glyur000549s00029265.1	PF00046.24	Homeobox	490	535	2.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.793
SRR1783600	control	4.787
SRR1783602	moderate drought stress	4.799
SRR1811619	moderate drought stress	4.813

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.035
DRR006520	Root Summer glycyrrhizin high producing strain	10.179
DRR006521	Root Winter glycyrrhizin high producing strain	6.895
DRR006522	Root Winter glycyrrhizin high producing strain	6.158
DRR006523	Root Summer glycyrrhizin low producing strain	11.130
DRR006524	Root Summer glycyrrhizin low producing strain	11.332
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.418
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.129

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.719
SRR2868004	Drought Stress (root)	10.548
SRR2967015	Control (root)	10.444

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.856
SRR9715740	Leaf	5.366
SRR9715741	Leaf	4.733
SRR9715739	Root	0.053
SRR9715742	Root	3.007
SRR9715743	Root	1.902

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.529
SRR8749028	MeJA induced 9h	7.816
SRR8749029	MeJA induced 9h	3.638
SRR8749030	Uninduced	4.197
SRR8749031	Uninduced	1.986
SRR8749032	Uninduced	2.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.026
SRR8400027	Control - Root	9.800