Gene detail

Gene detail information of Glyur000549s00029260.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22400.1	2.00E-69	PLAT/LH2 domain-containing lipoxygenase family protein
NR	KHN22174.1	3.72E-126	Linoleate 9S-lipoxygenase 5, chloroplastic [Glycine soja]
Swissprot	tr\|Q9LUW0\|LOX5_ARATH	7.00E-80	Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBL	tr\|A0A072UA69\|A0A072UA69_MEDTR	1.00E-125	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00549	62989	64594	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000549s00029260.1	PF00305.14	Lipoxygenase	1	213	4.90E-76

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.081
SRR1783600	control	0.120
SRR1783602	moderate drought stress	0.171
SRR1811619	moderate drought stress	0.203

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.678
DRR006520	Root Summer glycyrrhizin high producing strain	0.853
DRR006521	Root Winter glycyrrhizin high producing strain	0.173
DRR006522	Root Winter glycyrrhizin high producing strain	0.330
DRR006523	Root Summer glycyrrhizin low producing strain	0.512
DRR006524	Root Summer glycyrrhizin low producing strain	0.142
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.132

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.296
SRR2868004	Drought Stress (root)	0.598
SRR2967015	Control (root)	0.238

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.118
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.025
SRR9715739	Root	0.000
SRR9715742	Root	0.047
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.179
SRR8749028	MeJA induced 9h	0.377
SRR8749029	MeJA induced 9h	0.439
SRR8749030	Uninduced	0.363
SRR8749031	Uninduced	0.345
SRR8749032	Uninduced	0.129

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.104
SRR8400027	Control - Root	0.145