Gene detail

Gene detail information of Glyur000549s00029257

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	4.00E-87	NB-ARC domain-containing disease resistance protein
NR	KEH18640.1	0	NBS-LRR type disease resistance protein [Medicago truncatula]
COG	NP_485676.1	1.00E-14	regulatory protein [Nostoc sp. PCC 7120]
Swissprot	tr\|Q7XBQ9\|RGA2_SOLBU	1.00E-136	Disease resistance protein RGA2
trEMBL	tr\|A0A072TYL3\|A0A072TYL3_MEDTR	0	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:KEH18640.1}

Sequence

Transcript Sequence

>Glyur000549s00029257.1
CTCTGCGACTTTTCAATTTTCCTCTTGATCAATCTGCTTCTTCTGTGCTCTTTTTGAAGGATGGTTGAGCAAATTCCATATGCTGTTGCTGCAAGCCTCATTAACAGATTGGCTTCTGCTGCCTTTCGTGAATTTGGACGGATTTATGGTGTTATGGACGAGTTGGAAAGGCTTAAGAATACAGTTGAATCCATCAGAGCTGTGCTTCTTGATGCCGAGGAGAAACAAGAACAAAATCATGCTGTCAAAATCTGGATAAGAAGGCTCAAAGATGTGCTCCATCCCGCAGATGACTTGCTAGATGAATTTGTTATTGAAGATATGAGGTACAAAGTGGATGCAGGTCACAGGAACAAAGTGACAGAGGTATTTCATTCTTTGTCTCTAAACCGAATCTCTTTTCGCCATAAAATGGCCGGTAAAATTGAAAAAATGAGAAAAAGTTTTAATCATGTGGTGGAAGAAATGTCTGGGTTGAATTTAAGTCCAAATGTTGTGGTGGTTAAGAACAGTGATAGTGTCATGAGGGAAACTGGTTCTTTTGTGTTGGAATCGGATATCGTTGGAAGAGAAGATAGTAAAAAGGAGATTATAAGTTTGTTGAGGCAACATCATAAAAGTCAAAATGTTTCCTCGGTTGCTATTGTTGGTATTGGTGGTTTAGGCAAGACAACTCTTGCTCAGTTGGTATATAATGATGTGGAAGTGCAAAAAAATTTTGAAAAACTTATATGGGTATGTGTCTCTGACAACTTTGATGTCAAAACTATTGTGAAAAAAATGTTGGAGTCATTTGATAGCAAAATCGATGATAAGTTATCATTAGACAACTTGCAAAATAAGCTTCGTGAACATTTAACCGGCAAAAAATACTTGTTAGTCCTCGATGACATTTGGAGTGAGAGTCCTAAAAAATGGGCTCAATTGAGAACTTACTTGATGTGTGGTGCTCAAGATAGTAAAGTTTTGGTGACAACTCGTAGTAAAATTGTGGCACAGACAGTGGGCGTAAGCGCCTCTTATGTTTTGAATGGTTTGACTCCAGAAGAATCCTGGAGTTTGTTAAAGAACATTGCATTTGGGGATGACACCATACGAGTGAGTCAAACTCTTGAATCGATTGGTAAGAAGATAGCAGAGAAGTGTGGAGGAGTTCCTCTAGCAATTAGAACACTGGGAGGCCTATTACAGGATAAAAGTGAAGAAACTGAATGGACCAATGTCTTAGAAGGTGACCTTTGGAAATTATGTGAAGATGAAGAGGGCATCATGCCGGTCCTGAATCTGAGTTACCAAAACTTGCCACCTCAACTAAGACAATGCTTTGCATATTGCTCCTTGTATCCTAAGGATTGGGAAATAAGGAAGGATGAGTTGATTCAATTGTGGATGGCACAGGGTTATCTTGAATGTTCAACTGAAAGGCAGCTCATGGAAGATGTCGGTAACCAATTCGTGAAGATTTTCTTGATGAAGTCATTTTTCCAAGATGTAAAAATGAATGAAGAAGGTGGTATATATCTTTTCAAAATGCATGATTTAATGCATGATCTTGCAATGCAAGTAACTGGCAAGGATTGTTGCTACCTGAATAGTGAGGCAGAAAGACCAACAGAAAGACCCATGCATGTATCGTTCGAACCTGGCGCTGTTGGCTTGTTGGACTCGTTGGATGCAAGCAGGTTGCGAACTTTGATTTTGTTGTCTCGCAATGGTGAGGGAATATCAAATGGGGAGGAATTGTCTATTATTTCAAATTTCAAATACTTGCGTGTCTTGATGCTTTCGAATTCTAGTTTAAGCAGTCTGTCTGGTTCAATTAAAAAATTGAAGCACTTAAGATGTCTGCGCTTGGAATACTGCACAGAATTGGGAAGACTTTCCAAATCCATAAGCAATCTTGTTTGCTTACAAACACTAATATTGAGACATTTTGAAAGAATTGAACTTTCTACAAAAATTCTCTCAAAATTAATCAACTTGAGATACATTCACACTCATAATTTGGAATTATCCCAAGAGAAGACGCCAGCTAGATTCAGAAAATTGGACATGGGGCGGTACAAGCGCATGAATTTTTTAAATTGGTTTTCTTTACTCACAAATATCGTTGAAATCTCTCTCGGATTGTGTGAAAGTCCCCGATATCTCTCACCGTTAGAACGTCTCCCATTCCTTAAATCACTTTCTATAGATGGACTTGGGTCATTGGAGTACATATATTATGAAGAAGGTTTCCCTCCTAAACCATTCTTCCCATCTTTGGAGAGGCTCATATTGGTGGGCTGTGGAAAGCTGAGGGGGTGGCGGAGGATGGAAGATGATTTCAATGATACTAACTCTTCACACCATCTCTCCTTGCCCCCATTTCCTCGTATTTCTCTTTTAACAATCGCTCGGTGTCCGATGTTGACTTACATGCCTACTTTTCCAAAACTTGAGAAGAAACTCTCCTTATGGGATTGTAGAGTGGAGACTTTGGAAGCAACACTTAACTTAGAAGCACCAGAATGTTCGATTGGCTTCCCTCCTCTTTCCATGCTCAAATTCTTGGCCATTTCAGGAGACCTCCTAGACGTGGAAAGATTGCCGAAGGGTTGGGTGCAAAATCTCACTTCTCTCAAGAATCTTGACTTTTATGGGATTTCAAGTAAAACATTTAGGGAAATTGGAATTTGGTTTAAGGATGTCATGGACTATCTTCCTTCTCTGCAAAAAGTCACCTTTTATGGTTGTGGTGGTCACCTAGAGGCATTGCCAGATTGGATGTGCAACCTCTCATCGCTTCAGCATGTCGTTGTGACACGCTGTAAAAAGTTGGGATTGCTGCCTGAAGGAATGCATCGTCTTACCAATTTGCAGACCTTGGAAATCACTCGATGCCCCCTCTTAGCTGAAGAATGCAAGACAGAAACAAGTGCAACTTGGCCCAAAATTGCTCACATCCCAAACATAATCATAAACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00549	23228	26344	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000549s00029257.1	PF00931.17	NB-ARC	170	451	1.20E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.969
SRR1783600	control	0.936
SRR1783602	moderate drought stress	0.617
SRR1811619	moderate drought stress	0.594

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.581
DRR006520	Root Summer glycyrrhizin high producing strain	3.541
DRR006521	Root Winter glycyrrhizin high producing strain	3.137
DRR006522	Root Winter glycyrrhizin high producing strain	3.126
DRR006523	Root Summer glycyrrhizin low producing strain	0.037
DRR006524	Root Summer glycyrrhizin low producing strain	0.036
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.890
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.881

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.638
SRR2868004	Drought Stress (root)	0.694
SRR2967015	Control (root)	0.725

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.104
SRR9715740	Leaf	2.947
SRR9715741	Leaf	0.066
SRR9715739	Root	0.142
SRR9715742	Root	0.000
SRR9715743	Root	0.124

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.012
SRR8749028	MeJA induced 9h	0.067
SRR8749029	MeJA induced 9h	0.031
SRR8749030	Uninduced	0.052
SRR8749031	Uninduced	0.078
SRR8749032	Uninduced	0.057

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.035
SRR8400027	Control - Root	2.830