Gene detail

Gene detail information of Glyur000548s00021030.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60590.1	0	Pectin lyase-like superfamily protein
NR	AES96173.2	0	polygalacturonase [Medicago truncatula]
COG	NP_693009.1	4.00E-29	hypothetical protein OB2088 [Oceanobacillus iheyensis HTE831]
Swissprot	tr\|Q949Z1\|PGLR4_ARATH	8.00E-120	Polygalacturonase At1g48100 (Precursor)
trEMBL	tr\|G7K092\|G7K092_MEDTR	0	Polygalacturonase {ECO:0000313\|EMBL:AES96173.2}

Sequence

Transcript Sequence

>Glyur000548s00021030.1
CTTGTTTTTTGGCAAATAAAAAGAAGCCCTTCTCTCTCTCTCTCACTCCTGAGTTTTCCACTCACATTTTCCACATAACTACTACTGAAAAATGAGTGGCTTGAGTTTCAGGGGCTTCACCTACATGCTCCTCATTGCATTTCTTATTTGGTCTTCCAATTTTGAGTGCTGCATTGCAAGAAGAGGCAAGCATTGGAGGCACAAAAGCAGAACTGTGTCAGCTTCTCTGTTCAAGAACAAGGGAAAAGGTTATAATGGGAATGGTCACAAAGGTCACCGTGGTGGAGGATCAAACTCAAAGTCAAAACCAAAGCCTCCTCCTCCAACACATAGAAGTACTCCTACTCCACCATCACCAAAAAAGGCTCCACCACCCCATAAAAGCACTCCATCATCCCCACCAATTCCAAAGCCAAAAGTCTCTCCTTCAAGTCCTCCACCAAAAGCTTACAATGGCGTGCATTCTACCATCTTCAATGTGCTTGATTATGGAGCTAAGGCAAATAATAACACTGATGACACAAAGGCATTCCAAGCAACATGGGCAGCTGCATGTAAGGTAGAGGCATCAACCATGCTCGTCCCAGCAAATTACGCCTTCTACGTGGGGCCTATTTCGTTCTCGGGCCCTTACTGTAAACCCAACATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAACCCAAACGCTTGGGGTGGAGGGTTGCTACAGTGGCTGGAATTCTCAAAACTAGTGGGAATTACCATTCAAGGAAATGGTGTCATTGATGGAAGAGGNTCAGTCTGGTGGCAAAGTTCCCCTTATGATAATCCAATTGATGATGAAGAAAAGCTTATAGTTCCCTTAAATCACACACAGAANCCCCCAATGCCGGTACAAAGTGAGATGGGGAGAAAAATGCCAAGCATCAAGCCAACTGCACTAAGGTTTTATGGGAGCTTTAGTCCAACTGTCACGGGCATAACAATTCAAAATAGTCCTCAGTGCCACCTCAAGTTTGACAATTGCAATGGGGTCCTTGTTCATGATGTCAGCATTTCATCTCCTGGTAACAGCCCCAACACGGATGGAATTCACCTCCAGAATTCCAAAGATGTATTGATTCGCAGCAGCAAGTTAGCATGTGGAGATGACTGTATTTCCATACAAACTGGATGCTCAAATGTGTATGTACACAATGTCAACTGTGGGCCAGGGCATGGAATCAGCATTGGAAGTTTAGGGAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGAGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACTTGGCAGGGTGGATCTGGCTCAGTGCAAGGGGTACTATTCTCAAACATACAAGTTTCAGAAGTTCAGCTCCCAATTGTGATTGACCAATTCTACTGCGATAAAACAACATGCACAAACCACACATCAGCAGTGGCACTGGCAGGGATAAACTACGAGAGAATAAGGGGGACATACACAGTGAAGCCAGTGCACTTTGCCTGCAGTGATAGTTTGCCATGTGTGGATGTTTCTTTAACCTCTGTGGAGTTAAAACCGGTTCAAGAACAATACCACCTATATGATCCATTCTGCTGGCAGACTTTTGGTGAGTTAAGAACTCCCACAGTACCACCAATTGCTTGTCTTCAGATTGGGAAACCATCAAGCAATCGGGTTCAGACGGATCATGACATGTGTTAATTACTTGATTAAGCTTAGATGTGTAATTAAATTCATATTCATATATATGGTTGTTTTTGTTTCTCACCTGAGTGATATAAAGTGAATTCAGTTTTAGTGTTAGATATATATATCCCTTCACACTGTTAGAGTGTCAGATGAGAGAGCATGTATATTCCAAAAGTTCTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00548	75076	81108	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000548s00021030.1	PF00295.12	Glyco_hydro_28	158	240	5.60E-11
Glyur000548s00021030.1	PF00295.12	Glyco_hydro_28	275	493	2.60E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.324
SRR1783600	control	13.424
SRR1783602	moderate drought stress	2.040
SRR1811619	moderate drought stress	1.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.819
DRR006520	Root Summer glycyrrhizin high producing strain	29.343
DRR006521	Root Winter glycyrrhizin high producing strain	0.018
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	13.267
DRR006524	Root Summer glycyrrhizin low producing strain	13.346
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.932
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.980

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.984
SRR2868004	Drought Stress (root)	2.981
SRR2967015	Control (root)	2.808

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.375
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.716
SRR9715739	Root	1.922
SRR9715742	Root	1.907
SRR9715743	Root	1.719

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.037
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.013
SRR8749030	Uninduced	0.051
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.011

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.999
SRR8400027	Control - Root	78.099