Gene detail

Gene detail information of Glyur000548s00021025

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10650.1	9.00E-104	SBP (S-ribonuclease binding protein) family protein
NR	XP_007157438.1	0	hypothetical protein PHAVU_002G070200g [Phaseolus vulgaris]
Swissprot	tr\|Q9LDD1\|BRG3_ARATH	5.00E-29	Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBL	tr\|V7CJ89\|V7CJ89_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29433.1}

Sequence

Transcript Sequence

>Glyur000548s00021025.1
GTTACAAAATATCAGTTTATAAAAATATTCACTGAGAGTAAAATGAATGCTGCATTGCTTCCATTCTAACATNGAGGACCTCCATTCCTGTCCACCCAATCTGACATCTTGGGAGGCATGCACGGTATCCTCATTGTGAGTTCCTCTATTCTCCCCTCAGTTGGATCCAGCAGGTTAGACCAAATGTTAAGTGAACTAAATAGCCAGAAGTGAAATCAAAGATAGAATTCCAAGAGATTGAACTAAAGAACACCAATAGCTATATTATTCAATTCTCAAGGAACATCTACAGTGATTTCCGAAGCTCAAAGCTACACAGAGAATGTTCCCCCTGTCCACACAACCATATGCTCACCAAAANCTGCCCTATTCTGCTCAGCACTCCCCTTCTAATACTTCTGATCACGCAATCTCTCTCCTCTAACAAACTTCCCACTACCTCAGCAACATAACTAACTCTCACACCAGATTGCCATCTATCCCCTATTTCTTTTTCCTAGTGTAAACTTTCAATATTTTAGGTCTCTCAAGTCTCAACCCCTTGACCTAGCATTACATCTGTTACTGCATTATGGACCCTATCATATATAGATTATTATTTTTCACTAAATTACATGACAACTAGGAGACAGGAAAATATTTGCAATGAATAATCACAGCCTGCTTCTGAAACTAGTTAAAGAGTTTATTTGAAAAACTAATAAAGTCTTCTTCACTAGACCATCAACTCTCCTATCCTTTCAAGCCATATAGTTTAAATTATTGTACTGATGATGTGATTATTGGTTCTGGAGTATTTGATGTTAGCTGTTCATAATTCAAAATTTGATGCTAAGTTCTCCCTCTCCTCCTCCTTCTCCTTGTAGATAATTATTGGCAGCTTCAATAATACTATTTTAAAGCTATATAAGTCGAGTCAGCCAATTGCATTTCCTGGGATAATGTTCGGGGGCAACAATGGAAATCGTATGCTTCCTGGTTTCCTGGATGAGAATCAATTTCAGTGTCAAACCAATGCGGCGAATCAGTTGCAGTTGTTTGGAAACTTACAAGCTGGATGTAGTGTTGATCCAGTTAATTACTTTGGAAATGAGCATATCAATTCCATGATTCTGCCTAATAAACGAAGCAGGGAATTGGAAGATATCTCAAAGCAGCAAAGGCTTCAAATTTCCTTAAATTACAATGTCTGTCAAGATGATGCTGATCGATCAGCAAGTATTCCAAACCCTAACCCTGTTTCAACAGGATTGAGGCTTTCATACGATGATGATGAGCGTAACTCATCTGTTACTTCTGCTAGTGGCAGCATGACTGCCACTCCTCCTATCATATTGTCGCTTGGTGACAATATCAGAACTGAGCTTGATAGGCAGCAAGAAGAGTTGGACCAGTATATTAAACTTCAGAAGGAACAATTGTCAAAAGGAGTAAGAGACATGAAGCAAAAACACATGGTTTCTCTCCTTACTTCCATTGAGAAAGGTATTGGCAAGAAGCTAAAAGAAAAAGATGTGGAGATAGAGAACATGAACCGTAAAAATAGGGAGCTAGCGGAGCGAATAAAGCAGGTGGCTATCGAAGCACAAAACTGGCACTACCGAGCAAAGTATAACGAGTCAGTTGTCAATGCATTGAGGAACAATCTCCAGCAGGCAATTTCACAAGGAGCTGAACAAGGGAAGGAAGGGTTTGGAGACAGTGAAGTTGATGATGCTGCCTCATACATAGATCCCAATAACTTCCTGAGTATTCCAGGTGCACCTATGAAATCTATTTACAAGAGCTACCAAGGCATGGAGAATCTTTCTTGCAGGGCATGCAAGGCAAAGGAGGTTTCCATGTTGTTGATGCCCTGTAGGCACCTGTGCTTGTGTAAAGACTGTGATGGATTTGTCAATGTCTGTCCTGTATGCCAATTGATAAAAACTGGAAGTGTCGAGGTGTATCTGTCTTAACTTATGAAGGGTAAGTATTTGAAACAACAATGGAATATACACAACTGTTTTCTTTGTGTGATTTATTTGCCCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00548	50709	54167	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0016567 protein ubiquitination

GO:0031347 regulation of defense response

cellular_component
GO:0005634 nucleus

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000548s00021025.1	PF13920.1	zf-C3HC4_3	288	326	3.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.702
SRR1783600	control	6.797
SRR1783602	moderate drought stress	6.302
SRR1811619	moderate drought stress	6.111

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.948
DRR006520	Root Summer glycyrrhizin high producing strain	11.908
DRR006521	Root Winter glycyrrhizin high producing strain	8.896
DRR006522	Root Winter glycyrrhizin high producing strain	8.438
DRR006523	Root Summer glycyrrhizin low producing strain	13.067
DRR006524	Root Summer glycyrrhizin low producing strain	13.315
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.285
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.060

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.485
SRR2868004	Drought Stress (root)	35.071
SRR2967015	Control (root)	26.305

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.798
SRR9715740	Leaf	18.705
SRR9715741	Leaf	41.893
SRR9715739	Root	3.676
SRR9715742	Root	8.300
SRR9715743	Root	7.892

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.771
SRR8749028	MeJA induced 9h	53.378
SRR8749029	MeJA induced 9h	42.196
SRR8749030	Uninduced	59.487
SRR8749031	Uninduced	70.663
SRR8749032	Uninduced	41.826

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.186
SRR8400027	Control - Root	19.403