Gene detail

Gene detail information of Glyur000548s00021018.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10670.4	0	ATP-citrate lyase A-1
NR	XP_004489821.1	0	PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cicer arietinum]
COG	YP_004151630.1	1.00E-112	ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(citrate cleavage enzyme) [Thermovibrio ammonificans HB-1]
Swissprot	tr\|Q9SGY2\|ACLA1_ARATH	0	ATP-citrate synthase alpha chain protein 1
trEMBL	tr\|G7K076\|G7K076_MEDTR	0	ATP-citrate synthase alpha chain protein {ECO:0000313\|EMBL:AES96157.1}

Sequence

Transcript Sequence

>Glyur000548s00021018.1
GTTGACACTTTGGTTGAACGTAGAGCCGGTTGCTCAGAAGGAAGTATCAAGTAGTAGTTGGTAGGTACCATACACATGTGCATGTGTTGTTGCCTAATTCCTCTTCCGCCTCCTCTATTAATTTACCAACCCAACAACCCCATCATTTTCTTTTCCCAGTTTTTCCCTTCTCCAAACAATAATAAAAAAATCGAAGCTTTCACCTATAAATAGAGCCACAACACACACTTGGATCGTTCGTTCATCCATTCGTTAGATCTATCTAACAATCCAGCCCACCTTCCCCACCACCCTGAATAAGAAGAAATGGCGCGCAAGAAGATCAGAGAGTATGACTCCAAGAGGTTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCAAGGACTTACCCATCAAGTCTGCTCAAATTACAGAGTCCACTGATTTTACTGAGCTGCAAGACAAGGAACCTTGGCTTTCTTCTTCCAAATTGGTTGTGAAGCCTGACATGTTATTTGGAAAGCGTGGTAAAAGCGGTTTGGTTGCCTTAAATTTGGATTTCGCGCAAGTTGCTTCATTTGTGAGAGAGCGTCTTGGTAAAGAGGTTGAGATGAGTGGATGCAAAGGACCCATAACCACTTTCATTGTTGAACCTTTCATCCCGCACAACGAAGAGTTTTACCTTAACATTGTCTCTGATAGACTTGGGAACAGCATAAGCTTTTCTGAATGTGGAGGAATTGAAATCGAAGAGAACTGGGATAAGGTTAAGACCNTATTCGTTCCAACAGGAGTGTCTATTACATCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAGGGAGAAATTGAGGAATTTCTGAAGGTGATTTTCACTCTGTTTCAAGACCTGGATTTCACTTTCTTAGAGATGAATCCTTTTACATTGGTTAATGGAAAGCCTTATCCTTTGGATATGAGAGGAGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTGCCACCGAGTCCTTCATTCATGGATTGGATGAAAAGACAAGTGCATCTCTAAAATTCACAGTGCTGAACCCAAAGGGCCGAATTTGGACAATGGTTGCAGGGGGAGGTGCTAGTGTCATCTATGCTGATACAGTAGGAGATCTTGGCTTTGCATCCGAGCTTGGAAACTATGCAGAATATAGCGGTGCACCCAATGAAGAGGAAGTTTTGCAGTACGCCAGAGTTGTGATTGATTGTGCAACTGCAGATCCTGATGGCCAAAAAAGGGCTCTTGTTATAGGAGGCGGCATAGCTAACTTTACTGATGTTGCTGCTACNTTTAGTGGCATAATTCGGGCACTAAAGGAGAAGGTTTATGGACCTGAAGCAACAATGACTGGAATATGCAAAGAAGCAATACAGTGCATTACTGCTGCTGCTTAACTATCCATTTGTGATCAATGCTTCTTGTATGGTATTTTCGTTGTAAGTTTGAAGTGAACATTGATTCTTTCCTTTCCCGTTCGTGGAATTCGGAAATTCAGTTAGAGCATGTTTATAAAATCAAGCCATAAAAAAAGGGTGGCCAAGAATGTTGTTGTCTCATTTTTTGTAGAATTTGATGGCACTGTCTTAACGCAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00548	3894	7954	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01648	ACLY	EC:2.3.3.8	Citrate cycle (TCA cycle)	map00020
			Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000548s00021018.1	PF08442.5	ATP-grasp_2	6	203	2.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	99.268
SRR1783600	control	97.942
SRR1783602	moderate drought stress	66.541
SRR1811619	moderate drought stress	65.168

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	68.349
DRR006520	Root Summer glycyrrhizin high producing strain	66.587
DRR006521	Root Winter glycyrrhizin high producing strain	33.594
DRR006522	Root Winter glycyrrhizin high producing strain	32.651
DRR006523	Root Summer glycyrrhizin low producing strain	48.458
DRR006524	Root Summer glycyrrhizin low producing strain	48.284
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.749

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	250.775
SRR2868004	Drought Stress (root)	187.244
SRR2967015	Control (root)	169.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	120.445
SRR9715740	Leaf	56.989
SRR9715741	Leaf	87.301
SRR9715739	Root	77.690
SRR9715742	Root	94.055
SRR9715743	Root	84.768

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	115.203
SRR8749028	MeJA induced 9h	172.441
SRR8749029	MeJA induced 9h	97.338
SRR8749030	Uninduced	625.269
SRR8749031	Uninduced	970.473
SRR8749032	Uninduced	251.136

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	216.518
SRR8400027	Control - Root	199.056