Gene detail information of Glyur000547s00026286 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28080.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KHN02052.1 | 0 | Protein KIAA0664-like protein [Glycine soja] |
| COG | YP_003573719.1 | 2.00E-22 | hypothetical protein PRU_0335 [Prevotella ruminicola 23] |
| Swissprot | tr|F4J5S1|CLU_ARATH | 5.00E-93 | Clustered mitochondria protein |
| trEMBL | tr|I1JWD6|I1JWD6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G24430.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00547 | 105252 | 136997 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000547s00026286.1 | PF15044.1 | CLU_N | 28 | 86 | 2.40E-07 |
| Glyur000547s00026286.1 | PF12807.2 | eIF3_p135 | 651 | 799 | 1.10E-35 |
| Glyur000547s00026286.1 | PF13424.1 | TPR_12 | 864 | 937 | 5.30E-14 |
| Glyur000547s00026286.1 | PF13424.1 | TPR_12 | 948 | 1025 | 1.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.123 |
| SRR1783600 | control | 4.110 |
| SRR1783602 | moderate drought stress | 5.581 |
| SRR1811619 | moderate drought stress | 5.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.488 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.470 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.466 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.431 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.772 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 48.422 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 48.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.715 |
| SRR2868004 | Drought Stress (root) | 3.340 |
| SRR2967015 | Control (root) | 2.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 72.970 |
| SRR9715740 | Leaf | 85.399 |
| SRR9715741 | Leaf | 65.544 |
| SRR9715739 | Root | 0.240 |
| SRR9715742 | Root | 2.527 |
| SRR9715743 | Root | 2.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.673 |
| SRR8749028 | MeJA induced 9h | 5.182 |
| SRR8749029 | MeJA induced 9h | 1.942 |
| SRR8749030 | Uninduced | 2.154 |
| SRR8749031 | Uninduced | 1.681 |
| SRR8749032 | Uninduced | 1.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.991 |
| SRR8400027 | Control - Root | 5.256 |