Gene detail information of Glyur000547s00026275 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G38720.1 | 2.00E-50 | |
| NR | KEH29781.1 | 7.00E-124 | ribosomal RNA-processing protein [Medicago truncatula] |
| trEMBL | tr|A0A072UK54|A0A072UK54_MEDTR | 3.00E-124 | Ribosomal RNA-processing protein {ECO:0000313|EMBL:KEH29781.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00547 | 15537 | 21793 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000547s00026275.1 | PF12923.2 | RRP7 | 201 | 334 | 3.50E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.904 |
| SRR1783600 | control | 9.904 |
| SRR1783602 | moderate drought stress | 11.089 |
| SRR1811619 | moderate drought stress | 10.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.068 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.758 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.819 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.798 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.201 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.537 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.462 |
| SRR2868004 | Drought Stress (root) | 19.483 |
| SRR2967015 | Control (root) | 17.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.606 |
| SRR9715740 | Leaf | 22.497 |
| SRR9715741 | Leaf | 26.294 |
| SRR9715739 | Root | 1.679 |
| SRR9715742 | Root | 9.274 |
| SRR9715743 | Root | 7.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.094 |
| SRR8749028 | MeJA induced 9h | 35.285 |
| SRR8749029 | MeJA induced 9h | 45.912 |
| SRR8749030 | Uninduced | 40.679 |
| SRR8749031 | Uninduced | 26.327 |
| SRR8749032 | Uninduced | 21.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.052 |
| SRR8400027 | Control - Root | 18.173 |